View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13975_low_100 (Length: 235)

Name: NF13975_low_100
Description: NF13975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13975_low_100
NF13975_low_100
[»] chr8 (3 HSPs)
chr8 (152-235)||(24052687-24052770)
chr8 (1-80)||(24052536-24052615)
chr8 (1-76)||(32475578-32475653)
[»] chr4 (4 HSPs)
chr4 (1-78)||(48825331-48825408)
chr4 (8-78)||(53146969-53147039)
chr4 (1-76)||(26698128-26698203)
chr4 (1-75)||(55416946-55417020)
[»] chr7 (2 HSPs)
chr7 (1-70)||(6561119-6561188)
chr7 (6-77)||(23688171-23688242)
[»] chr2 (1 HSPs)
chr2 (3-76)||(26159642-26159715)
[»] chr6 (1 HSPs)
chr6 (1-57)||(12250954-12251010)
[»] chr5 (2 HSPs)
chr5 (1-76)||(15259039-15259114)
chr5 (28-77)||(25714530-25714579)


Alignment Details
Target: chr8 (Bit Score: 72; Significance: 7e-33; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 152 - 235
Target Start/End: Original strand, 24052687 - 24052770
Alignment:
Q  152 gttccttgttgtaacaacttttattctttcttaattctcttctgacacatcttgtactagaaagactaagatatctagtaaatt 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  |||||||    
T  24052687 gttccttgttgtaacaacttttattctttcttaattctcttctgacacatcttgtgctagaaagactaagatatcaggtaaatt 24052770  T

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Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 24052536 - 24052615
Alignment:
Q  1 gttgaaggcaaatcattatacttttgttttcaattaccacatgtggtggcttaatcctctcttttgtttgagagttcacc 80  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||    
T  24052536 gttgaaggcaaatcattatacttttgttttcaattaccatatgtggtggcttaatcctctcttttgcttgggagttcacc 24052615  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 32475653 - 32475578
Alignment:
Q  1 gttgaaggcaaatcattatacttttgttttcaattaccacatgtggtggcttaatcctctcttttgtttgagagtt 76  Q
    ||||||| ||||||||  || ||| | ||||||||| || ||||||||||| ||||| |||||||||||| |||||    
T  32475653 gttgaagacaaatcatcctaatttcgctttcaattatcatatgtggtggctcaatcccctcttttgtttgggagtt 32475578  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 48825408 - 48825331
Alignment:
Q  1 gttgaaggcaaatcattatacttttgttttcaattaccacatgtggtggcttaatcctctcttttgtttgagagttca 78  Q
    ||||||||||||||||  || ||||||||| ||||||||||||| |||||||||||| || || |||||| |||||||    
T  48825408 gttgaaggcaaatcatcctaattttgtttttaattaccacatgtcgtggcttaatccccttttatgtttgggagttca 48825331  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 78
Target Start/End: Complemental strand, 53147039 - 53146969
Alignment:
Q  8 gcaaatcattatacttttgttttcaattaccacatgtggtggcttaatcctctcttttgtttgagagttca 78  Q
    ||||||||| ||| ||||| ||| |||||||| |||||||||||||||||||| || |||||| |||||||    
T  53147039 gcaaatcatcataattttgcttttaattaccatatgtggtggcttaatcctcttttatgtttgggagttca 53146969  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 26698128 - 26698203
Alignment:
Q  1 gttgaaggcaaatcattatacttttgttttcaattaccacatgtggtggcttaatcctctcttttgtttgagagtt 76  Q
    ||||||| ||||||||  || ||||| ||| ||||| ||||||||||||||||||||||| || |||||| |||||    
T  26698128 gttgaagccaaatcatcctaattttgcttttaattatcacatgtggtggcttaatcctcttttatgtttgggagtt 26698203  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 55416946 - 55417020
Alignment:
Q  1 gttgaaggcaaatcattatacttttgttttcaattaccacatgtggtggcttaatcctctcttttgtttgagagt 75  Q
    ||||||||||||||||  || ||||| ||| ||||||||||  |||||||||||| ||||  |||||||| ||||    
T  55416946 gttgaaggcaaatcatcctaattttgcttttaattaccacacatggtggcttaattctcttgtttgtttgggagt 55417020  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 6561188 - 6561119
Alignment:
Q  1 gttgaaggcaaatcattatacttttgttttcaattaccacatgtggtggcttaatcctctcttttgtttg 70  Q
    ||||||||||||||||| || ||||  ||| ||||| || |||||||||||||||||||| || ||||||    
T  6561188 gttgaaggcaaatcattttaatttttcttttaattatcatatgtggtggcttaatcctcttttatgtttg 6561119  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 77
Target Start/End: Complemental strand, 23688242 - 23688171
Alignment:
Q  6 aggcaaatcattatacttttgttttcaattaccacatgtggtggcttaatcctctcttttgtttgagagttc 77  Q
    |||||||||||| ||  |||| || |||||| |||||||||||||||||||| || || |||||| ||||||    
T  23688242 aggcaaatcattctaaatttgcttacaattatcacatgtggtggcttaatccccttttatgtttgggagttc 23688171  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 76
Target Start/End: Complemental strand, 26159715 - 26159642
Alignment:
Q  3 tgaaggcaaatcattatacttttgttttcaattaccacatgtggtggcttaatcctctcttttgtttgagagtt 76  Q
    ||||| ||||||||  || ||||| ||| | ||| ||||||||||||||||||||||| || ||||||||||||    
T  26159715 tgaagacaaatcatcctaattttgcttttagttatcacatgtggtggcttaatcctcttttatgtttgagagtt 26159642  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 12250954 - 12251010
Alignment:
Q  1 gttgaaggcaaatcattatacttttgttttcaattaccacatgtggtggcttaatcc 57  Q
    |||||| ||||||||| ||| ||||| ||| ||||| ||||||||||||||||||||    
T  12250954 gttgaaagcaaatcatcataattttgcttttaattatcacatgtggtggcttaatcc 12251010  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 15259114 - 15259039
Alignment:
Q  1 gttgaaggcaaatcattatacttttgttttcaattaccacatgtggtggcttaatcctctcttttgtttgagagtt 76  Q
    |||||| |||||||||  || ||||| |||||| || || |||||||||||||| ||||| || ||||||||||||    
T  15259114 gttgaaagcaaatcatattaattttgctttcaactatcatatgtggtggcttaaccctctattgtgtttgagagtt 15259039  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 77
Target Start/End: Complemental strand, 25714579 - 25714530
Alignment:
Q  28 tttcaattaccacatgtggtggcttaatcctctcttttgtttgagagttc 77  Q
    |||||||||  ||||||||||||||||||| |||| ||||||| ||||||    
T  25714579 tttcaattattacatgtggtggcttaatcccctctattgtttgggagttc 25714530  T

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