View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13975_low_101 (Length: 233)
Name: NF13975_low_101
Description: NF13975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13975_low_101 |
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Alignment Details
Target: chr5 (Bit Score: 136; Significance: 4e-71; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 22551954 - 22551807
Alignment:
| Q |
1 |
agcaaaaccaaatccaccaaagaagccaagaagatcgccaaagaaagggaatgtaaccccaataaaaagtgtaaaagctgcaacaaattaacaagatggt |
100 |
Q |
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| T |
22551954 |
agcaaaaccaaatccaccaaagaagccaagaagatcgccaaagaaagggaatgtaaccccaataaaaagtgtaaaagctgcaacaaattaacaagatggt |
22551855 |
T |
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| Q |
101 |
tgttacttaaaaaatttgagttaaacacatttttaatgtttataaaat |
148 |
Q |
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| T |
22551854 |
tgttgcttaaaaaaattgagttaaacacgtttttaatgtttataaaat |
22551807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 143 - 217
Target Start/End: Complemental strand, 22551521 - 22551447
Alignment:
| Q |
143 |
taaaatctcttatgaagtttagcccggacaaatatttttatcgatgctaataccataatatgatatgcttagaac |
217 |
Q |
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| T |
22551521 |
taaaatctcttatgaagtttagcctggacaaatatttttatcgatgctaagaccataatatgatatgcttagaac |
22551447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 41896225 - 41896318
Alignment:
| Q |
1 |
agcaaaaccaaatccaccaaagaagccaagaagatcgccaaagaaagggaatgtaaccccaataaaaagtgtaaaagctgcaacaaattaacaa |
94 |
Q |
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| T |
41896225 |
agcaaaaccaaatccaccaaagaacccaagaagatctccaaagaaaggaaaactcaccccaaataataatgtaaaagctgaaacatatcaacaa |
41896318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 41890613 - 41890657
Alignment:
| Q |
1 |
agcaaaaccaaatccaccaaagaagccaagaagatcgccaaagaa |
45 |
Q |
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| T |
41890613 |
agcaaaaccaaatccaccaaagaatccaagaagatcaccaaagaa |
41890657 |
T |
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