View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13975_low_105 (Length: 229)
Name: NF13975_low_105
Description: NF13975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13975_low_105 |
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| [»] scaffold0176 (2 HSPs) |
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Alignment Details
Target: scaffold0176 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: scaffold0176
Description:
Target: scaffold0176; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 18 - 219
Target Start/End: Complemental strand, 28818 - 28617
Alignment:
| Q |
18 |
taaaggagaaaaagactcaaagcaggtaatatctcatgcataaaaagtggcacaaaattagtgagataaactaatttgcaaaggaaatgtaagaaacata |
117 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
28818 |
taaaggagaaaaagactcaaagcaggtaatatctcatacataaaaagtggcacaaaattagtgagataaactaatttacaaaggaaatgtaagaaacata |
28719 |
T |
|
| Q |
118 |
tctctaattcggtcaccaaaattagtgttggtgagttaattgctgaagannnnnnnnaataagtgacaatcaatatatacctctattatccacaggttct |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
28718 |
tctctaattcggtcaccaaaattagtgttggtgagttaattactgaagattttttttaataagtgacaatcaatatatacctctattatccacaagttct |
28619 |
T |
|
| Q |
218 |
gc |
219 |
Q |
| |
|
|| |
|
|
| T |
28618 |
gc |
28617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0176; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 18 - 219
Target Start/End: Complemental strand, 35319 - 35118
Alignment:
| Q |
18 |
taaaggagaaaaagactcaaagcaggtaatatctcatgcataaaaagtggcacaaaattagtgagataaactaatttgcaaaggaaatgtaagaaacata |
117 |
Q |
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|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
35319 |
taaaggagaaaaagactcaaagcaggtaatatctcatacataaaaagtggcacaaaattagtgagataaactaatttacaaaggaaatgtaagaaacata |
35220 |
T |
|
| Q |
118 |
tctctaattcggtcaccaaaattagtgttggtgagttaattgctgaagannnnnnnnaataagtgacaatcaatatatacctctattatccacaggttct |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
35219 |
tctctaattcggtcaccaaaattagtgttggtgagttaattactgaagattttttttaataagtgacaatcaatatatacctctattatccacaagttct |
35120 |
T |
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| Q |
218 |
gc |
219 |
Q |
| |
|
|| |
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|
| T |
35119 |
gc |
35118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 162; Significance: 1e-86; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 18 - 219
Target Start/End: Original strand, 34155409 - 34155610
Alignment:
| Q |
18 |
taaaggagaaaaagactcaaagcaggtaatatctcatgcataaaaagtggcacaaaattagtgagataaactaatttgcaaaggaaatgtaagaaacata |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
34155409 |
taaaggagaaaaagactcaaagcaggtaatatctcatacataaaaagtggcacaaaattagtgagataaactaatttacaaaggaaatgtaagaaacata |
34155508 |
T |
|
| Q |
118 |
tctctaattcggtcaccaaaattagtgttggtgagttaattgctgaagannnnnnnnaataagtgacaatcaatatatacctctattatccacaggttct |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
34155509 |
tctctaattcggtcaccaaaattagtgttggtgagttaattactgaagattttttttaataagtgacaatcaatatatacctctattatccacaagttct |
34155608 |
T |
|
| Q |
218 |
gc |
219 |
Q |
| |
|
|| |
|
|
| T |
34155609 |
gc |
34155610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 18 - 219
Target Start/End: Complemental strand, 34168496 - 34168295
Alignment:
| Q |
18 |
taaaggagaaaaagactcaaagcaggtaatatctcatgcataaaaagtggcacaaaattagtgagataaactaatttgcaaaggaaatgtaagaaacata |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
34168496 |
taaaggagaaaaagactcaaagcaggtaatatctcatacataaaaagtggcacaaaattagtgagataaactaatttacaaaggaaatgtaagaaacata |
34168397 |
T |
|
| Q |
118 |
tctctaattcggtcaccaaaattagtgttggtgagttaattgctgaagannnnnnnnaataagtgacaatcaatatatacctctattatccacaggttct |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
34168396 |
tctctaattcggtcaccaaaattagtgttggtgagttaattactgaagattttttttaataagtgacaatcaatatatacctctattatccacaagttct |
34168297 |
T |
|
| Q |
218 |
gc |
219 |
Q |
| |
|
|| |
|
|
| T |
34168296 |
gc |
34168295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 18 - 219
Target Start/End: Complemental strand, 34208706 - 34208504
Alignment:
| Q |
18 |
taaaggagaaaaagactcaaagcaggtaatatctcatgcataaaaagtggcacaaaattagtgagataaactaatttgcaaaggaaatgtaagaaacata |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
34208706 |
taaaggagaaaaagactcaaagcaggtaatatctcatacataaaaagtggcacaaaattagtgagataaactaatttacaaaggaaatgtaagaaacata |
34208607 |
T |
|
| Q |
118 |
tctctaattcggtcaccaaaattagtgttggtgagttaattgctgaaga-nnnnnnnnaataagtgacaatcaatatatacctctattatccacaggttc |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34208606 |
tctctaattcggtcaccaaaattagtgttggtgagttaattactgaagatttttttttaataagtgacaatcaatatatacctctattatccacaagttc |
34208507 |
T |
|
| Q |
217 |
tgc |
219 |
Q |
| |
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||| |
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|
| T |
34208506 |
tgc |
34208504 |
T |
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