View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13975_low_11 (Length: 560)
Name: NF13975_low_11
Description: NF13975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13975_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 18 - 551
Target Start/End: Complemental strand, 35469782 - 35469247
Alignment:
| Q |
18 |
ggaatgacactatgccaattgtcgtccaagagaaggataactgatgtaaggtgtgtagagctggtattagtaggacttggaggtcatttttaagtgcaat |
117 |
Q |
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| T |
35469782 |
ggaatgacactatgccaattgtcgtccaagagaaggataactgatgtaaggtgtgtagagctggtattagtaggacttggaggtggtttttaagtgcaat |
35469683 |
T |
|
| Q |
118 |
gttgatgggttggtgctggatagtagcagagtcgcttgt--tggggtcttaagagataataatcttggccacggatgggtggttttgttcgcaatgtaga |
215 |
Q |
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| T |
35469682 |
gttgatgggttggtgctgaatagtagcagagtcgcttgtgttggggtcttaagagataataatcttggccacggatgggtggttttgttcgcagtgtaga |
35469583 |
T |
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| Q |
216 |
atcgtctaacgctcttatgacataaatatggggtttagtcacaattgagacctaactcatctaaactttttcctataaaataaaattgaaagttattata |
315 |
Q |
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| T |
35469582 |
atcgtctaacgctcttatgacataaatatggggtttggtcacaattgagacctaactcacctaaactttttcctataaaataaaattgaaagttattata |
35469483 |
T |
|
| Q |
316 |
ttatttcttgaaaaattcatcttaattatatttttctgaatccgttgtaatggaaaaaagattatgtccggtgcaatttcctcatgtttttcatgtggta |
415 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35469482 |
ttatttcttgaaaagttcatcttaattatatttttctgaatccgttgtaatggaaaaaagattatgtccggtgcaatttcctcatgtttttcatgtggta |
35469383 |
T |
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| Q |
416 |
caatatataccattaagcctannnnnnnnnnnnnnnnaaaaatttataattttaaatgttcaaatttcattggactctttattcacttaagaggatccaa |
515 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35469382 |
caatatataccattaagcctattttttgtatttttttaaaaatttataattttaaatgttcaaatttcattggactctttattcacttaagaggatccaa |
35469283 |
T |
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| Q |
516 |
ctcgttatttttagactgttgtgatggtatattttt |
551 |
Q |
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||||||||||||||||| |||||||||||||||||| |
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| T |
35469282 |
ctcgttatttttagactattgtgatggtatattttt |
35469247 |
T |
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