View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13975_low_14 (Length: 521)
Name: NF13975_low_14
Description: NF13975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13975_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 18 - 433
Target Start/End: Original strand, 13959973 - 13960388
Alignment:
| Q |
18 |
acaagtggctgatgagcttcttcatgtgcatgtgacataacaagtgatgatggttccaacaaaaccaaacctgcttgattattgtttagtgttgttgtag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13959973 |
acaagtggctgatgagcttcttcatgtgcatgtgacataacaagtgatgatggttccaacaaaaccaaacctgcttgattattgtttagtgttgttgtag |
13960072 |
T |
|
| Q |
118 |
ataattgtcctgtcccacgtagaagaagatcaagtcttgaatataaaggccaagatgaaacatctgaactagctgattctgatctataccttttcttcat |
217 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13960073 |
ataattgtcctgtcccacgtagaagaagatcaagtctagaatataaaggccaagatgaaacatctgaactagctgattctgatctataccttttcttcat |
13960172 |
T |
|
| Q |
218 |
tgactcaatcttattcttacactgtgtttgtgtctttggtgacttagttgagtttgatcttgatgaaacatgttttgcaacatcttcccaatcttgtcct |
317 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13960173 |
tgactcaatcttattcttacactgtgtttgtgtctttggtgacttagttgagtttgatcttgatgaaacatgttttgcaacatcttcccaatcttgtcct |
13960272 |
T |
|
| Q |
318 |
ttgagttttgctctatttctaagtacccattttgattcatatgcttcaagaagtgttgtaactgctccttcactccattcatctctttttagtctctcat |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13960273 |
ttgagttttgctctatttctaagtacccattttgattcatatgcttcaagaagtgttgtaactgctccttcactccattcatctctttttagtctctcat |
13960372 |
T |
|
| Q |
418 |
ttccactaccaataat |
433 |
Q |
| |
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|||||||||||||||| |
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|
| T |
13960373 |
ttccactaccaataat |
13960388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 18 - 433
Target Start/End: Complemental strand, 4029148 - 4028733
Alignment:
| Q |
18 |
acaagtggctgatgagcttcttcatgtgcatgtgacataacaagtgatgatggttccaacaaaaccaaacctgcttgattattgtttagtgttgttgtag |
117 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4029148 |
acaagtggctgatgaacttcttcttgtgcatgtgacataacaagtgatgatggttccaacaaaaccaaacctgcttgattattgtttagtgttgttgtag |
4029049 |
T |
|
| Q |
118 |
ataattgtcctgtcccacgtagaagaagatcaagtcttgaatataaaggccaagatgaaacatctgaactagctgattctgatctataccttttcttcat |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4029048 |
ataattgtcctgtcccacgtagaagaagatcaagtctagaatacaaaggccaagatgaaacatctgaactagctgattctgatctataccttttcttcat |
4028949 |
T |
|
| Q |
218 |
tgactcaatcttattcttacactgtgtttgtgtctttggtgacttagttgagtttgatcttgatgaaacatgttttgcaacatcttcccaatcttgtcct |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4028948 |
tgactcaatcttattcttacactgtgtttgtgtctttggtgacttagttgagtttgatcttgatgaaacatgttttgcaacatcttcccaatcttgtcct |
4028849 |
T |
|
| Q |
318 |
ttgagttttgctctatttctaagtacccattttgattcatatgcttcaagaagtgttgtaactgctccttcactccattcatctctttttagtctctcat |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4028848 |
ttgagttttgctctatttctaagtacccattttgattcatatgcttcaagaagtgttgtaactgctccttcactccattcatctctttttagtctctcat |
4028749 |
T |
|
| Q |
418 |
ttccactaccaataat |
433 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
4028748 |
ttccactaccaataat |
4028733 |
T |
|
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