View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13975_low_15 (Length: 512)
Name: NF13975_low_15
Description: NF13975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13975_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 12 - 496
Target Start/End: Original strand, 31831884 - 31832368
Alignment:
| Q |
12 |
ttctcgatgaggatttgaactatgttatgtctctttagttaggtagtcacatatagttcggttgatgagctgaggaacaccttagaaataataacgagga |
111 |
Q |
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| T |
31831884 |
ttctcgatgaggatttgaactatgttatgtctctttagttaggtagtcacatatagttcggttgatgagctgaagaacaccttagaaataataacgagga |
31831983 |
T |
|
| Q |
112 |
ggttcaaaattcaaaatctaagaactaattactaacataattgactaatttaccaacataccaaaaagtaggaaaaagtaacaaaacacatgcaattttg |
211 |
Q |
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| T |
31831984 |
ggttcaaaattcaaaatctaagaactaattactaacataatcggctaatttaccaacatactaaaaagtaggaaaaagtaacaaaacacatgcaattttg |
31832083 |
T |
|
| Q |
212 |
cataacagtggaaacttgcataattatcttatttactcttttggtcctttgcagaaacaataaaaagaaagaatgctgtgaagaatgctcattgtttgtg |
311 |
Q |
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| T |
31832084 |
cataacagtggaaacttgcataattatcttatttactcttttggtcttttgcagaaacaataaaaagaaagaatgctgtgaagaatgctcattgtttgtg |
31832183 |
T |
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| Q |
312 |
ttagaaaagacatgtgcaaattttggtggatatgaagcttcttttacttgtggaggctaatgatttcactcagaactattaaagtgaatgagtaaattta |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
31832184 |
ttagaaaagacatgtgcaaattttggtggatatgaagcttcttttacttgtggaggctaatgatttcactgagaactattaaagtgaatgagtaaattta |
31832283 |
T |
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| Q |
412 |
ttagtttttcaaatannnnnnngctttctcttttgtgaataagatgaaagttggaaccaaaaggagagaaagaaatgtgcacaat |
496 |
Q |
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||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31832284 |
ttagtttttcaaatatttttttgttttctcttttgtgaataagatgaaagttggaaccaaaaggagagaaagaaatgtgcacaat |
31832368 |
T |
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