View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13975_low_17 (Length: 509)
Name: NF13975_low_17
Description: NF13975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13975_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 487; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 1 - 503
Target Start/End: Original strand, 28762093 - 28762595
Alignment:
| Q |
1 |
ttacattaacacatagttcattagaaatggggagatattaaaatcttacataccattatgcttcattgacaatttgccgttgtgcctttaaatttgacgt |
100 |
Q |
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| T |
28762093 |
ttacattaacacatagttcattagaaatggggagatattaaaatcttacataccattatgcttcattgacaatttgccgttgtgcctttaaatttgacgt |
28762192 |
T |
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| Q |
101 |
aagtgttcttcctgaaaattgaaattcgccgctgtacttgtatctttatatattatacaatcaaggatctactatcacctcaatgtgatttgaaattctc |
200 |
Q |
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| T |
28762193 |
aagtgttcttcctgaaaattgaaattcgccgttgtacttgtatctttatatattatacaatcaaggatctactatcacctcaatgtgatttgaaatttgc |
28762292 |
T |
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| Q |
201 |
cgttgtatcttcctgaaatttgtgtgtggctatgttcattttgtatgcatttacaggaagaagtagtttgattaaatgaaactaaccttcttactcgcag |
300 |
Q |
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| T |
28762293 |
cgttgtatcttcctgaaatttgtgtgtggctatgttcattttgtatgcatttacaggaagaagtagtttgattaaatgaaactaaccttcttactcgcag |
28762392 |
T |
|
| Q |
301 |
ctttagttgttttttgtcatctctctgtccattgaaattgttgagcttcattatttactggcatatcatgacttagctatgtgtcccttaagcaaagcat |
400 |
Q |
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| T |
28762393 |
ctttagttgttttttgtcatctctctgtccattgaaattgttgagcttcattatttactggcatatcatgacttagctatgtgtcccttaagcaaagcat |
28762492 |
T |
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| Q |
401 |
ataattatgctttggcagacatcggttgaggctagtgatgctttgactgtttgagttgtgtccgactcaattggtccagtttctcaattctgatattctt |
500 |
Q |
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| T |
28762493 |
ataattatgctttggcagacatcggttgaggctagtgatgctttgactgtttgagttgtgtccgactcaattggtccagtttctcaattctgatattcgt |
28762592 |
T |
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| Q |
501 |
cga |
503 |
Q |
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| T |
28762593 |
cga |
28762595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 436 - 495
Target Start/End: Original strand, 42798911 - 42798970
Alignment:
| Q |
436 |
tgatgctttgactgtttgagttgtgtccgactcaattggtccagtttctcaattctgata |
495 |
Q |
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| T |
42798911 |
tgatgctttgattgtttgagttgtgtctgactcagttggtccagttgctcaattctgata |
42798970 |
T |
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