View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13975_low_18 (Length: 508)
Name: NF13975_low_18
Description: NF13975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13975_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 15 - 490
Target Start/End: Complemental strand, 43713833 - 43713358
Alignment:
| Q |
15 |
cagagaggtgtgaagagtaaatggctaatgtttcaagcttttttagtagtccaatagttggtggaatgaaacctgagatgcttgtttctgctaagcccaa |
114 |
Q |
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| T |
43713833 |
cagagaggtgtgaagagtaaatggttaatgtttcaagcttttttagtagtccaatagttggtggaatgaaacctgagatgcttgtttctgctaagcccaa |
43713734 |
T |
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| Q |
115 |
catgatcaaattggaacagtgtccaatttcctgtggtataggtccttctagattcttgtttcctccagctcttatcacttgaagattcttcatgttgccg |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
43713733 |
catgatcaaattggaacagtgtccaatttcctgtggtataggtccttctagattcttgtttcctccagctcttatcacttgaagattcttcatgttgcgg |
43713634 |
T |
|
| Q |
215 |
attgtgtttggaattttgccactgagctgattgtcatatagggtcagctttgttaattttgtgaggttaccaattgcaattggtattgatcccacgagct |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
43713633 |
attgtgtttggaattttgccactgagctgattgtcatatagggtcagctttgttaattttgtgaggttaccaattgcaattggtattgatcccacaagct |
43713534 |
T |
|
| Q |
315 |
cgtttgagttcagatgaagttcctcgagcttgggcaagtagcagagttcaattgggatttcgccgctcaatgcattgtcacttaagtccaagtagctgag |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
43713533 |
cgtttgagttcagatgaagttcctcgagcttgggcaagtagcagagttcaattgggatttcgccgctcaaagcattgtcacttaagtccaagtagctgag |
43713434 |
T |
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| Q |
415 |
ttcaacaagattgcctatttctttcgggatcgaaccagtgagattcgttcccgttaagataagactagtcaaggat |
490 |
Q |
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|||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
43713433 |
ttcaacaagattgcctatttctttagggatcgaaccggtgagattcgttcccgttaagataagactagtcaaggat |
43713358 |
T |
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