View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13975_low_20 (Length: 502)
Name: NF13975_low_20
Description: NF13975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13975_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 20 - 488
Target Start/End: Original strand, 52920306 - 52920781
Alignment:
| Q |
20 |
cctaaatcaatcaattaagttcaagagaatcagaaaaggcaaatgcacctttttgcactcgaaaaatgaattaagtgctgacatgccatattcatccata |
119 |
Q |
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|||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52920306 |
cctaaatcaatcaattaagtacaagagaatcggaaaaggcaaatgcacctttttgcactcgaaaaatgaattaagtgctgacatgccatattcatccata |
52920405 |
T |
|
| Q |
120 |
gatt--------gattctagctgttcagcaagactgcaatacaacaaattgagaagtgaaatcattaaaattattcttttcaagcagctaattagttcca |
211 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52920406 |
gattcatatattgattctagctgttcagcaagactgcaatacaacaaattgagaagtgaaatcattaaaattattcttttcaagcagctaattagttcca |
52920505 |
T |
|
| Q |
212 |
tgtcaaaataatttaaaatctctccgatatttagtatactttcttcactcgaaggtgcactccaatagtgataacagattaaggtttgctactttatttc |
311 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
52920506 |
tgtcaaaataatttaaaatctctctgatatttagtatactttcttcactcgaaggtgcactccaatagtgataacagattaaggttggctactttatttc |
52920605 |
T |
|
| Q |
312 |
cctaactattattacaggtttcacaaactatgtcaagtctcattgcaacagtaaggttgttgtgacattggaggttagatcttacacattctagacctgg |
411 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52920606 |
cctaactattattacaggcttcacaaactatgtcaagtctcagtgcaacagtaaggttgttgtgacattggaggttagatcttacacattctagacctgg |
52920705 |
T |
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| Q |
412 |
aaatggcccccctagacacaataaggttccattcatgacactccctgtactttgaaatggagcagatgcaagtactg |
488 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
52920706 |
aaatggcccccctagacacaataagg-tccattcatgacactccctatactttgaaatggagcagatgcaagtactg |
52920781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 20 - 488
Target Start/End: Original strand, 35232033 - 35232509
Alignment:
| Q |
20 |
cctaaatcaatcaattaagttcaagagaatcagaaaaggcaaatgcacctttttgcactcgaaaaatgaattaagtgctgacatgccatattcatccata |
119 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
35232033 |
cctaaatcaatcaattaagtacaagcgaatcagaaaaggcaaatgcacctttttgcactcgaaaaacgaattaagtgctgacatgccatattcatccata |
35232132 |
T |
|
| Q |
120 |
gatt--------gattctagctgttcagcaagactgcaatacaacaaattgagaagtgaaatcattaaaattattcttttcaagcagctaattagttcca |
211 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
35232133 |
gattcatatattgattctagctgttcagcaagactgcaatacaacaaattgataagtgaaatcattaaaattattgttttcaagcagctaattagttcca |
35232232 |
T |
|
| Q |
212 |
tgtcaaaataatttaaaatctctccgatatttagtatactttcttcactcgaaggtgcactccaatagtgataacagattaaggtttgctactttatttc |
311 |
Q |
| |
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|| |||||||||| |||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
35232233 |
tgccaaaataattcaaaatctctctgatatttagtatactttattcactcaaaggtgcactccaatagtgataacagattaaggtcggctactttatttc |
35232332 |
T |
|
| Q |
312 |
cctaactattattacaggtttcacaaactatgtcaagtctcattgcaacagtaaggttgttgtgacattggaggttagatcttacacattctagacctgg |
411 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35232333 |
cctaactattattacaggcttcacaaactatgtcaagcctcagtgcaacagtaaggttgttgtgacattggaggttagatcttacacattctagacctgg |
35232432 |
T |
|
| Q |
412 |
aaatggcccccctagacacaataaggttccattcatgacactccctgtactttgaaatggagcagatgcaagtactg |
488 |
Q |
| |
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|||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||| |
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|
| T |
35232433 |
aaatggcctccctagacacaataaggttgcattcatgacactccctatactttgaaatggagcagatgcacgtactg |
35232509 |
T |
|
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