View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13975_low_21 (Length: 491)
Name: NF13975_low_21
Description: NF13975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13975_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 481
Target Start/End: Original strand, 19055751 - 19056251
Alignment:
| Q |
1 |
cattcaccatatagtaaattatggttaaattaatgggaatttatcttgtaatttacacataaaagtgaaatgtaatatctcaccattcactaagagatag |
100 |
Q |
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| T |
19055751 |
cattcaccatatagtaaattatggttaaattaatgggaattgatcttgtaatttacacataaaagtgaaatgtaatatctcaccattcattaagagatag |
19055850 |
T |
|
| Q |
101 |
aaacataagagaaaattagataaaatgaaattgaatggtgaaagatcacattttaaactttcatttgtaaattacttgagagaattcattttgtaagtta |
200 |
Q |
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| T |
19055851 |
aaacataagaggaaaatagataaaatgaaattgaatggtgaaagatcacattttaaactttcatttgtaaattacttgagagaattcattttgtaagtta |
19055950 |
T |
|
| Q |
201 |
aatgtacttttgctcgggtcatccggctcaacactaatgtgactcgacgaataatgcataaaagagcacttaaaataattgtggcaaaacaaagtaatac |
300 |
Q |
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| T |
19055951 |
agtgtacttttgctcgggtcatccggctcaacactaatttgactcgacgaataatgcataaaagagaacttaaaataattgtggcaaaacaaagtaatac |
19056050 |
T |
|
| Q |
301 |
caccactgctaccattactacttattgtaaaacaattatcaaaaccaagtatgtagctaaattcttgagttttattagagtggactaaagtct------- |
393 |
Q |
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| T |
19056051 |
caccactcctaccattactacttattgtaaaacaattatcaaaaccaagtatgtagctaaattcttgagttttattagagtggactaaagtctcactcaa |
19056150 |
T |
|
| Q |
394 |
-------------aacttataataacggactacatttttagtttttaaactgcaattaggttccctaagcctagccaatttcaacttatgagactcatat |
480 |
Q |
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| T |
19056151 |
aaataaggcatcaaacttataataacggactacatttttagtttttaaactgcacttaggttccctaggtctagccaatttcaacttatgagactcatat |
19056250 |
T |
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| Q |
481 |
t |
481 |
Q |
| |
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| T |
19056251 |
t |
19056251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 99 - 173
Target Start/End: Original strand, 30282682 - 30282756
Alignment:
| Q |
99 |
agaaacataagagaaaattagataaaatgaaattgaatggtgaaagatcacattttaaactttcatttgtaaatt |
173 |
Q |
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||||||| | || ||||||||||||||||| |||||||||| ||||||||||||||| || |||| |||||||| |
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| T |
30282682 |
agaaacacatgaaaaaattagataaaatgagattgaatggttaaagatcacattttatcctctcatatgtaaatt |
30282756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 399
Target Start/End: Original strand, 14861021 - 14861090
Alignment:
| Q |
330 |
aaacaattatcaaaaccaagtatgtagctaaattcttgagttttattagagtggactaaagtctaactta |
399 |
Q |
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|||| ||||||||||||||| | || | |||||||| |||||||||| |||||||||||||| ||||| |
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| T |
14861021 |
aaaccattatcaaaaccaagcaaataacaaaattcttctgttttattagcgtggactaaagtctcactta |
14861090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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