View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13975_low_22 (Length: 484)
Name: NF13975_low_22
Description: NF13975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13975_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 130; Significance: 4e-67; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 28 - 165
Target Start/End: Original strand, 35652950 - 35653086
Alignment:
| Q |
28 |
ttgtcttggtttttaaatcatgatgaaattatttgtgatggattcacaataacttctttcgctacatgcagcattacctaatagaaaacttggcatgttt |
127 |
Q |
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| T |
35652950 |
ttgtcttggtttt-aaatcatgatgaaattatttgtgatggattcacaataacttctttcgctacatgcagcattacctaatagaaaacttggcatgttt |
35653048 |
T |
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| Q |
128 |
caaatattaatttaatgaatctaacaaaggaaacgaaa |
165 |
Q |
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| T |
35653049 |
caaatattaatttaatgaatctaacaaaggaaacgaaa |
35653086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 162 - 316
Target Start/End: Original strand, 35653117 - 35653271
Alignment:
| Q |
162 |
gaaaacataattatggatctagctagaaatctatctctaaatagatgatattgtattatttaaatttctcaattacatgatttaggccttnnnnnnnggg |
261 |
Q |
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| T |
35653117 |
gaaaacataaatatggatctagctagaaatctatctctagatagatgatattgtattatttaaatttctcaattacatgatttaggccttaaaaaaaggg |
35653216 |
T |
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| Q |
262 |
tgccctatgaggtattccctttcttcttgaatttggcttttggataggaagcatg |
316 |
Q |
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| T |
35653217 |
tgccctatgaggtattccctttcttcttgaatttggcttttggataggaagcatg |
35653271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 435 - 480
Target Start/End: Original strand, 35653390 - 35653435
Alignment:
| Q |
435 |
gtgccttgatcgattcctccaacaatctttccatttcttctctctc |
480 |
Q |
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| T |
35653390 |
gtgccttgatcgattcctccaacaatctttccatttcttctgtctc |
35653435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 260 - 300
Target Start/End: Original strand, 35676866 - 35676906
Alignment:
| Q |
260 |
ggtgccctatgaggtattccctttcttcttgaatttggctt |
300 |
Q |
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| T |
35676866 |
ggtgccctatgagctattccctttctttttgaatttggctt |
35676906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 260 - 300
Target Start/End: Original strand, 35682901 - 35682941
Alignment:
| Q |
260 |
ggtgccctatgaggtattccctttcttcttgaatttggctt |
300 |
Q |
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| T |
35682901 |
ggtgccctatgagctattccctttctttttgaatttggctt |
35682941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 177 - 296
Target Start/End: Original strand, 35667937 - 35668053
Alignment:
| Q |
177 |
gatctagctagaaatctatctctaaatagatgatattgtattatttaaatttctcaattacatgatttagg-ccttnnnnnnngggtgccctatgaggta |
275 |
Q |
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| T |
35667937 |
gatctagctagaaatctatctcca----gacgatagtgtattatttaaatctctctaatccttgatttagggccttaaaagaaaggtgcccgttgaggta |
35668032 |
T |
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| Q |
276 |
ttccctttcttcttgaatttg |
296 |
Q |
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| T |
35668033 |
ttccctttcttcttgaatttg |
35668053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 480
Target Start/End: Complemental strand, 35099194 - 35099149
Alignment:
| Q |
435 |
gtgccttgatcgattcctccaacaatctttccatttcttctctctc |
480 |
Q |
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| T |
35099194 |
gtgccttgatcgattcttccagtaatctttccatttcttctgtctc |
35099149 |
T |
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