View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13975_low_23 (Length: 484)

Name: NF13975_low_23
Description: NF13975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13975_low_23
NF13975_low_23
[»] chr7 (2 HSPs)
chr7 (136-457)||(32945092-32945414)
chr7 (29-140)||(32944919-32945030)
[»] chr1 (3 HSPs)
chr1 (372-459)||(18513844-18513933)
chr1 (410-455)||(23632193-23632238)
chr1 (418-454)||(9131711-9131747)
[»] chr3 (5 HSPs)
chr3 (356-453)||(18534451-18534548)
chr3 (366-450)||(18705557-18705641)
chr3 (375-446)||(30993274-30993347)
chr3 (366-455)||(3290606-3290697)
chr3 (373-455)||(3593054-3593137)
[»] chr5 (2 HSPs)
chr5 (375-455)||(39435986-39436066)
chr5 (413-449)||(39176465-39176501)
[»] chr4 (5 HSPs)
chr4 (372-455)||(19611950-19612033)
chr4 (372-457)||(25126262-25126346)
chr4 (372-457)||(15706662-15706749)
chr4 (344-423)||(15239969-15240049)
chr4 (372-451)||(14645733-14645810)
[»] chr2 (2 HSPs)
chr2 (380-424)||(20263760-20263804)
chr2 (401-455)||(27386966-27387020)
[»] scaffold0094 (1 HSPs)
scaffold0094 (372-455)||(48235-48319)
[»] chr8 (2 HSPs)
chr8 (366-445)||(40391350-40391429)
chr8 (366-455)||(17290598-17290689)
[»] chr6 (1 HSPs)
chr6 (379-455)||(9548741-9548820)
[»] scaffold0815 (1 HSPs)
scaffold0815 (349-423)||(1305-1379)
[»] scaffold0088 (1 HSPs)
scaffold0088 (372-455)||(35518-35603)
[»] scaffold0101 (1 HSPs)
scaffold0101 (366-423)||(555-610)
[»] scaffold0323 (1 HSPs)
scaffold0323 (362-447)||(16216-16303)
[»] scaffold0005 (1 HSPs)
scaffold0005 (372-451)||(171480-171557)


Alignment Details
Target: chr7 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 136 - 457
Target Start/End: Original strand, 32945092 - 32945414
Alignment:
Q  136 gaaaccgggcggcaaggcaacatcaagtaattgatttggattcgcacgacacagttatgattttccaacaattaaaactcaatttaacagctacgaattc 235  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  32945092 gaaacagggaggcaaggcaacatcaagtaattgatttggattcgcacgacacatttatgattttccaacaattaaaactcaatttaacagctacgaattc 32945191  T
Q  236 ataaataatacgacaacaacaataagaagtaacacgcaggagtaataagattaaagtacacagcaagcaattagagcacaaa-tttaatttaaacataga 334  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  32945192 ataaacaatacgacaacaacaataagaagtaacacgcaggagtaataagattaaagtacacaacaagcaattagagcacaaattttaatttaaacataga 32945291  T
Q  335 ttcatcaaataaggaaacaacaaaaaataacaacccgtcactacccatatgttcatacaaccttatgatgaatataactccccccttacctctagttttg 434  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32945292 ttcatcaaataaggaaacaacaaaaaataacaacctgtcactacccatatgttcatacaaccttatgatgaatataactccccccttacctctagttttg 32945391  T
Q  435 cgaaattgatgatttcctacgtt 457  Q
    |||||||||||||||||||||||    
T  32945392 cgaaattgatgatttcctacgtt 32945414  T

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Target: chr7; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 29 - 140
Target Start/End: Original strand, 32944919 - 32945030
Alignment:
Q  29 atgaaaatcaagtaacagttagaatatcacatgcaatttaaataaaatagacatggcaacaaggagctagcacggcaatatgaattgaatggaacaacaa 128  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  32944919 atgaaaatcaagtaacagttagaatatcacatggaatttaaataaaatagacatggcaaccaggagcgagcacggcaatatgaattgaatggaacaacaa 32945018  T
Q  129 cgtgaaagaaac 140  Q
    ||||||||||||    
T  32945019 cgtgaaagaaac 32945030  T

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Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 372 - 459
Target Start/End: Complemental strand, 18513933 - 18513844
Alignment:
Q  372 tcactacccatatgttcatacaacc-ttatgatgaatata-actccccccttacctctagttttgcgaaattgatgatttcctacgttaa 459  Q
    |||||||| |||||||||||||||| ||||| |||||| | ||| ||||||||||| ||||||||||||||||||||||||||| |||||    
T  18513933 tcactacctatatgttcatacaacccttatggtgaatagagacttcccccttacctttagttttgcgaaattgatgatttcctatgttaa 18513844  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 410 - 455
Target Start/End: Complemental strand, 23632238 - 23632193
Alignment:
Q  410 aactccccccttacctctagttttgcgaaattgatgatttcctacg 455  Q
    |||||||||||||||||||||||| |||| ||||||| ||||||||    
T  23632238 aactccccccttacctctagtttttcgaatttgatgagttcctacg 23632193  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 418 - 454
Target Start/End: Complemental strand, 9131747 - 9131711
Alignment:
Q  418 ccttacctctagttttgcgaaattgatgatttcctac 454  Q
    ||||||||| |||||||||||||||||||||||||||    
T  9131747 ccttacctcgagttttgcgaaattgatgatttcctac 9131711  T

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Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 356 - 453
Target Start/End: Complemental strand, 18534548 - 18534451
Alignment:
Q  356 aaaaaataacaacccgtcactacccatatgttcatacaa-ccttatgatgaatata-actccccccttacctctagttttgcgaaattgatgatttccta 453  Q
    |||||| || ||||| |||||||| |||||||||||||| ||||||| |||||| | |||||||| ||||||||||||||||||||||||||||||||||    
T  18534548 aaaaaaaaaaaacccttcactacc-atatgttcatacaatccttatggtgaatagagactccccc-ttacctctagttttgcgaaattgatgatttccta 18534451  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 366 - 450
Target Start/End: Complemental strand, 18705641 - 18705557
Alignment:
Q  366 aacccgtcactacccatatgttcatacaaccttatgatgaatata-actccccccttacctctagttttgcgaaattgatgatttc 450  Q
    ||||| ||||||||| |||||||||||||||||||| | |||| | |||||||| | |||||||||||| ||||||||||||||||    
T  18705641 aacccttcactacccttatgttcatacaaccttatggtaaatagagactcccccat-acctctagttttacgaaattgatgatttc 18705557  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 375 - 446
Target Start/End: Complemental strand, 30993347 - 30993274
Alignment:
Q  375 ctacccatatgttcatacaacc-ttatgatgaatata-actccccccttacctctagttttgcgaaattgatga 446  Q
    |||||||||||||||||||||| ||||| |||||| | |||||||||||||||||||||| | ||| |||||||    
T  30993347 ctacccatatgttcatacaacccttatggtgaatagagactccccccttacctctagtttggagaatttgatga 30993274  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 366 - 455
Target Start/End: Original strand, 3290606 - 3290697
Alignment:
Q  366 aacccgtcactacccatatgttcatacaacc----ttatgatgaatataactccccccttacctctagttttgcgaaattgatgatttcctacg 455  Q
    ||||| |||||| ||||||||||||||| ||    | ||||||||||  |||||||| |||| |||||||||||||||||||||||||||||||    
T  3290606 aacccttcactatccatatgttcatacagcccctatgatgatgaataagactccccc-ttac-tctagttttgcgaaattgatgatttcctacg 3290697  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 373 - 455
Target Start/End: Original strand, 3593054 - 3593137
Alignment:
Q  373 cactacccatatgttcatacaacc-ttatgatgaatata-actccccccttacctctagttttgcgaaattgatgatttcctacg 455  Q
    |||||| | |||| |||||||||| |||||||||||| | |||| |||||||||||||| |||||  ||||||||||||||||||    
T  3593054 cactacacgtatgatcatacaacccttatgatgaatagagactctccccttacctctag-tttgccgaattgatgatttcctacg 3593137  T

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Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 375 - 455
Target Start/End: Complemental strand, 39436066 - 39435986
Alignment:
Q  375 ctacccatatgttcatacaaccttatgatgaatata-actccccccttacctctagttttgcgaaattgatgatttcctacg 455  Q
    |||||||||||||||||||  |||||| |||||| | |||||||| ||||||||||||||| ||||||||||||||||||||    
T  39436066 ctacccatatgttcatacagtcttatggtgaatagagactccccc-ttacctctagttttgtgaaattgatgatttcctacg 39435986  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 413 - 449
Target Start/End: Original strand, 39176465 - 39176501
Alignment:
Q  413 tccccccttacctctagttttgcgaaattgatgattt 449  Q
    |||||| ||||||||||||||||||||||||||||||    
T  39176465 tcccccattacctctagttttgcgaaattgatgattt 39176501  T

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Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 372 - 455
Target Start/End: Complemental strand, 19612033 - 19611950
Alignment:
Q  372 tcactacccatatgttcatacaaccttatgatgaatata-actccccccttacctctagttttgcgaaattgatgatttcctacg 455  Q
    |||||||| |||||||||| |||||||||| |||||| | ||||||||| |||||||| ||||||||||||||||||| ||||||    
T  19612033 tcactacctatatgttcatgcaaccttatg-tgaatagagactccccccatacctctaattttgcgaaattgatgattccctacg 19611950  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 372 - 457
Target Start/End: Complemental strand, 25126346 - 25126262
Alignment:
Q  372 tcactacccatatgttcatacaaccttatgatgaatata-actccccccttacctctagttttgcgaaattgatgatttcctacgtt 457  Q
    |||||||| ||||||| |||||||| |   ||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||    
T  25126346 tcactacctatatgtttatacaaccctt--atgaatagagactccccccatacctctagttttgcgaaattgatgatttcctacgtt 25126262  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 372 - 457
Target Start/End: Original strand, 15706662 - 15706749
Alignment:
Q  372 tcactacccatatgttcatacaac-cttatgatgaatata-actccccccttacctctagttttgcgaaattgatgatttcctacgtt 457  Q
    ||||||| ||| || ||||||||| |||| | |||||| | |||||||| ||||||||||||||||||||||||||||||| ||||||    
T  15706662 tcactactcatgtgatcatacaactcttacggtgaatagagactcccccattacctctagttttgcgaaattgatgatttcttacgtt 15706749  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 344 - 423
Target Start/End: Complemental strand, 15240049 - 15239969
Alignment:
Q  344 taaggaaacaacaaaaaataacaacccgtcactacccatatgttcatacaacc-ttatgatgaatataactccccccttac 423  Q
    |||| |||||||| ||| ||||||||| ||||||| || |||  || |||||| |||||||||||| ||||||||||||||    
T  15240049 taagaaaacaacagaaattaacaacccttcactacacacatgagcacacaacccttatgatgaataaaactccccccttac 15239969  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 372 - 451
Target Start/End: Original strand, 14645733 - 14645810
Alignment:
Q  372 tcactacccatatgttcatacaaccttatgatgaatata-actccccccttacctctagttttgcgaaattgatgatttcc 451  Q
    |||||||||| ||||||||||||||||||  |||||| | ||| ||||||||||||||||||| || ||||||||| ||||    
T  14645733 tcactacccagatgttcatacaaccttat-ttgaatagagact-cccccttacctctagttttccg-aattgatgacttcc 14645810  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 380 - 424
Target Start/End: Complemental strand, 20263804 - 20263760
Alignment:
Q  380 catatgttcatacaaccttatgatgaatataactccccccttacc 424  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  20263804 catatgttcatacaaccttatgatgaatataactccccccttacc 20263760  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 401 - 455
Target Start/End: Complemental strand, 27387020 - 27386966
Alignment:
Q  401 gatgaatataactccccccttacctctagttttgcgaaattgatgatttcctacg 455  Q
    |||||||| ||| |||| ||||||||||||||||||||||| ||||||| |||||    
T  27387020 gatgaataaaacccccctcttacctctagttttgcgaaattaatgattttctacg 27386966  T

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Target: scaffold0094 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 372 - 455
Target Start/End: Original strand, 48235 - 48319
Alignment:
Q  372 tcactacccatatgttcatacaa-ccttatgatgaatata-actccccccttacctctagttttgcgaaattgatgatttcctacg 455  Q
    |||||||||||||| |||||||| ||||||| |||||| | ||||||||||||||||||||||| || ||||||||| ||||||||    
T  48235 tcactacccatatgatcatacaatccttatggtgaatagagactccccccttacctctagttttccg-aattgatgaattcctacg 48319  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 366 - 445
Target Start/End: Original strand, 40391350 - 40391429
Alignment:
Q  366 aacccgtcactacccatatgttcatacaacc-ttatgatgaatataactccccccttacctctagttttgcgaaattgatg 445  Q
    ||||| ||||||| |||||||| ||| |||| ||| |||||||| |||||||| |||||||||||||||||||||||||||    
T  40391350 aacccttcactactcatatgtttatataacccttacgatgaataaaactcccc-cttacctctagttttgcgaaattgatg 40391429  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 366 - 455
Target Start/End: Original strand, 17290598 - 17290689
Alignment:
Q  366 aacccgtcactacccatatgttcatacaacc-ttatgatgaatata-actccccccttacctctagttttgcgaaattgatgatttcctacg 455  Q
    ||||| |||| |||||||| ||||||||||| ||||| |||||| | |||||||||||||||||| ||||| ||||||||| ||||| ||||    
T  17290598 aacccttcacaacccatatattcatacaacccttatggtgaatagagactccccccttacctctaattttgagaaattgataatttcatacg 17290689  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 379 - 455
Target Start/End: Original strand, 9548741 - 9548820
Alignment:
Q  379 ccatatgttcatacaacc-ttatgatgaatata-actccccccttacctctagtttt-gcgaaattgatgatttcctacg 455  Q
    ||||||| |||||||||| |||||||||| | | |||||||||||| |||||||||| ||||||||||||||||||||||    
T  9548741 ccatatgatcatacaacccttatgatgaacagagactccccccttatctctagtttttgcgaaattgatgatttcctacg 9548820  T

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Target: scaffold0815 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0815
Description:

Target: scaffold0815; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 349 - 423
Target Start/End: Original strand, 1305 - 1379
Alignment:
Q  349 aaacaacaaaaaataacaacccgtcactacccatatgttcatacaaccttatgatgaatataactccccccttac 423  Q
    |||||| | |||| ||||| || |||||||||||||| |||||||||||||||||||||| | |||||| |||||    
T  1305 aaacaatagaaaacaacaatccttcactacccatatggtcatacaaccttatgatgaataaatctccccacttac 1379  T

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Target: scaffold0088 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 372 - 455
Target Start/End: Complemental strand, 35603 - 35518
Alignment:
Q  372 tcactacccatatgttcatacaacc-ttatgatgaatata-actccccccttacctctagttttgcgaaattgatgatttcctacg 455  Q
    |||||||||||||||| |||||||| ||| | |||||| | ||||||||||||||||||||||  |||| ||||||| ||||||||    
T  35603 tcactacccatatgttgatacaacccttacgctgaatagagactccccccttacctctagtttgtcgaatttgatgagttcctacg 35518  T

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Target: scaffold0101 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 366 - 423
Target Start/End: Complemental strand, 610 - 555
Alignment:
Q  366 aacccgtcactacccatatgttcatacaaccttatgatgaatataactccccccttac 423  Q
    ||||| |||||||||||||||||||||  ||||| |||||||| ||||||||||||||    
T  610 aacccttcactacccatatgttcatac--ccttacgatgaataaaactccccccttac 555  T

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Target: scaffold0323 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0323
Description:

Target: scaffold0323; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 447
Target Start/End: Original strand, 16216 - 16303
Alignment:
Q  362 taacaacccgtcactacccatatgttcatacaacc-ttatgatgaatata-actccccccttacctctagttttgcgaaattgatgat 447  Q
    ||||||||| |||||||||| ||| |||||||||| || || |||||| | ||| |||||||||||||||||| | ||| ||||||||    
T  16216 taacaacccttcactacccacatgatcatacaacccttttggtgaatagagacttcccccttacctctagtttagagaatttgatgat 16303  T

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Target: scaffold0005 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 372 - 451
Target Start/End: Complemental strand, 171557 - 171480
Alignment:
Q  372 tcactacccatatgttcatacaaccttatgatgaatata-actccccccttacctctagttttgcgaaattgatgatttcc 451  Q
    |||||||||| ||||||||||||||||||  |||||| | ||| ||||||||||||||||||| || ||||||||| ||||    
T  171557 tcactacccagatgttcatacaaccttat-ttgaatagagact-cccccttacctctagttttccg-aattgatgacttcc 171480  T

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