View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13975_low_24 (Length: 479)
Name: NF13975_low_24
Description: NF13975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13975_low_24 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 1 - 479
Target Start/End: Original strand, 36970317 - 36970798
Alignment:
| Q |
1 |
agtccaacctacaatcctacaggatgtatgttttatccttttggtttaagataattatgtttccattattattgtttagtgtttgttcattttaattgaa |
100 |
Q |
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| T |
36970317 |
agtccaacctacaatcctacaggatgtatgttt-atccttttggtttaagataattatgtttccattattattgtttagtgtttgttcattttaattgaa |
36970415 |
T |
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| Q |
101 |
gtataatttgtatagactaaaatttcttgaacaccaagataaaactgatataaagtctttttagttatatttcttaatggtaaatctgtgttaaaaaaca |
200 |
Q |
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| T |
36970416 |
gtataatttgtatagactaaaattccttgaacaccaagataaaactgatataaagtctttttagttatatttcttaatggtaaatctgtgttaaaaaaca |
36970515 |
T |
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| Q |
201 |
aaagaatacaccgatgataatggataactcttttacgtaaacataatatgatttagactaaaattaaaacttaatgatatcacaaaggattcaaataatt |
300 |
Q |
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|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |
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| T |
36970516 |
aaagaatacaccgatgataatggaaaactcctttacgtaaacataatatgatttagactaaaatttaaacttaatgatattacaaaggattcaaataatt |
36970615 |
T |
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| Q |
301 |
----ggacatgttgcttatgtttgttttgcaaagtatatcaattttgacattcattcccaaactcatttgatggattgttttacaaataagctgctgata |
396 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
36970616 |
aatgggacatgttggttatgtttgttttgcaaagtatatcaattttgacattcattcccaaactcatttgatggattgttttacaaataagctgctaata |
36970715 |
T |
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| Q |
397 |
gaattatattactttgaacttatgaaatggaatggatagaagttgctatattaattcaaatcaaataaatcgttattttaata |
479 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
36970716 |
gaattatattactttgaacttatgaaatggaatggatagaagttgctatattaattctaatcaaataaatcgttattttaata |
36970798 |
T |
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