View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13975_low_26 (Length: 472)
Name: NF13975_low_26
Description: NF13975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13975_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 201 - 456
Target Start/End: Complemental strand, 27549338 - 27549083
Alignment:
| Q |
201 |
caaatgttcacaaatgcagttgccataaatgcggcatacatgcagacatacgtgggaggtgtatcgtgcccatacacttgtacaaggaggctggatcatg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27549338 |
caaatgttcacaaatgcagttgccataaatgcggcatacatgcagacatacgtgggaggtgtatcgtgcccatacacttgtacaaggaggctggatcatg |
27549239 |
T |
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| Q |
301 |
gagttttgctggtggggtacggttctggagcttatacgaaggagaagccgtattggattgttaaaaactcctggggcgagacgtggggagaaaatggata |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
27549238 |
gagttttgctggtggggtacggttctggagcttatacgaaggagaagccgtattggattgttaaaagctcctggggcgagacgtggggagaaaatggata |
27549139 |
T |
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| Q |
401 |
ctataagatttgtaggggacgaaatatctgtggagtggactcaatggtttctactg |
456 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27549138 |
ctataagatttgtaggggacgaaatatctgtggagtggactcaatggtttctactg |
27549083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 12 - 149
Target Start/End: Complemental strand, 27549527 - 27549390
Alignment:
| Q |
12 |
tatacttattacaagacaaacattgcacgatcggtggcggcaaatttcagttctgttttagttgatgacgaccaaattgctgccaatcttctcaaatatg |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27549527 |
tatacttattacaagacaaacattgcacgatcggtggcggcaaatttcagttctgttttagttgatgacgaccaaattgctgccaatcttctcaaatatg |
27549428 |
T |
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| Q |
112 |
gacctcttgctggtgagtaataccctaaaaatctgaac |
149 |
Q |
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| T |
27549427 |
gacctcttgctggtgagtaataccctaacaatctgaac |
27549390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 201 - 456
Target Start/End: Original strand, 27945371 - 27945638
Alignment:
| Q |
201 |
caaatgttcacaaatgcagttgccataaatgcggcatacatgcagacatacgtgggaggtgtatcgtgcccatacacttgtacaaggaggctggatcatg |
300 |
Q |
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||||||||||||||||||| ||| ||||| |||| |||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||| || |
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| T |
27945371 |
caaatgttcacaaatgcagctgcaataaacgcggtatacatgcagacatacgtgggaggaatatcatgcccatacatatgtacaaggaggctggatcttg |
27945470 |
T |
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| Q |
301 |
gagttttgctggtggggtacggttctggagctt------atacgaag------gagaagccgtattggattgttaaaaactcctggggcgagacgtgggg |
388 |
Q |
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| T |
27945471 |
gagttttgcttgtggggtatggttctggagctggagctgatatgaaggagaaggagaagccgtattggatcgttaaaaactcgtggggtgagacctgggg |
27945570 |
T |
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| Q |
389 |
agaaaatggatactataagatttgtaggggacgaaatatctgtggagtggactcaatggtttctactg |
456 |
Q |
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||| || |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27945571 |
agagaacggatactacaagatttgcaggggacgaaatatctgtggagtggactcaatggtttctactg |
27945638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 201 - 456
Target Start/End: Original strand, 27436879 - 27437146
Alignment:
| Q |
201 |
caaatgttcacaaatgcagttgccataaatgcggcatacatgcagacatacgtgggaggtgtatcgtgcccatacacttgtacaaggaggctggatcatg |
300 |
Q |
| |
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||||||||||||||||||| ||| ||||| |||| |||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||| || |
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| T |
27436879 |
caaatgttcacaaatgcagctgcaataaacgcggtatacatgcagacatacgtgggaggaatatcatgcccatacatatgtacaaggaggctggatcttg |
27436978 |
T |
|
| Q |
301 |
gagttttgctggtggggtacggttctggagct--------tat----acgaaggagaagccgtattggattgttaaaaactcctggggcgagacgtgggg |
388 |
Q |
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|||||||||| |||||||| |||||||||||| ||| ||||||||||||||||||||| ||||||||||| ||||| ||||| ||||| |
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| T |
27436979 |
gagttttgcttgtggggtatggttctggagctggagctgatatgaaggagaaggagaagccgtattggatcgttaaaaactcgtggggtgagacctgggg |
27437078 |
T |
|
| Q |
389 |
agaaaatggatactataagatttgtaggggacgaaatatctgtggagtggactcaatggtttctactg |
456 |
Q |
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||| || |||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||| |
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| T |
27437079 |
agagaacggatactacaagatttgcagaggacgaaatatctgtggagtggactcaatggtttctactg |
27437146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 203 - 456
Target Start/End: Original strand, 26766209 - 26766474
Alignment:
| Q |
203 |
aatgttcacaaatgcagttgccataaatgcggcatacatgcagacatacgtgggaggtgtatcgtgcccatacacttgtacaaggaggctggatcatgga |
302 |
Q |
| |
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||||| |||||||||||||||| | ||||| | ||| ||||| || ||||| ||||| ||||| || ||||||| || ||| ||| || ||||||||| |
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| T |
26766209 |
aatgtgcacaaatgcagttgccttgaatgccgtatatatgcaaacgtacgttggaggagtatcatgtccatacatatgctcaaagagactagatcatgga |
26766308 |
T |
|
| Q |
303 |
gttttgctggtggggtacggttctggagcttatacg------------aaggagaagccgtattggattgttaaaaactcctggggcgagacgtggggag |
390 |
Q |
| |
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|| || |||||||| || || |||||||| ||| || ||||||||||| |||||||| |||||||||| ||||| ||||| ||||||| |
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| T |
26766309 |
gtgttactggtgggatatggatctggagcctattcgcctattaggttgaaggagaagccatattggataattaaaaactcatggggtgagacttggggag |
26766408 |
T |
|
| Q |
391 |
aaaatggatactataagatttgtaggggacgaaatatctgtggagtggactcaatggtttctactg |
456 |
Q |
| |
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|||||||||||||||| || || ||||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
26766409 |
aaaatggatactataaaatatgcaggggacgaaatatctgcggagtggactctatggtttctactg |
26766474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 12 - 140
Target Start/End: Original strand, 27945191 - 27945319
Alignment:
| Q |
12 |
tatacttattacaagacaaacattgcacgatcggtggcggcaaatttcagttctgttttagttgatgacgaccaaattgctgccaatcttctcaaatatg |
111 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||| ||||||| || |||||||| | ||| ||| |
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| T |
27945191 |
tatacttattataagacaaacactgcacgatcggtggcggcaaatttcagttctatttcggttgatgacaaccaaatcgccgccaatctcgttaaacatg |
27945290 |
T |
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| Q |
112 |
gacctcttgctggtgagtaataccctaaa |
140 |
Q |
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| T |
27945291 |
gacctcttgctggtcagtaatactctaaa |
27945319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 12 - 140
Target Start/End: Original strand, 27436699 - 27436827
Alignment:
| Q |
12 |
tatacttattacaagacaaacattgcacgatcggtggcggcaaatttcagttctgttttagttgatgacgaccaaattgctgccaatcttctcaaatatg |
111 |
Q |
| |
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||||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||| ||||||| | |||||||| | ||| ||| |
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| T |
27436699 |
tatacttattataagacaaacactgcacgatcggtggcggcaaatttcagttctatttcggttgatgacaaccaaatcaccgccaatctcgttaaacatg |
27436798 |
T |
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| Q |
112 |
gacctcttgctggtgagtaataccctaaa |
140 |
Q |
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|||||||||||||| |||||||| ||||| |
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| T |
27436799 |
gacctcttgctggtcagtaatactctaaa |
27436827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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