View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13975_low_28 (Length: 468)

Name: NF13975_low_28
Description: NF13975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13975_low_28
NF13975_low_28
[»] chr5 (15 HSPs)
chr5 (270-454)||(33904150-33904334)
chr5 (129-205)||(33904399-33904475)
chr5 (130-205)||(33679819-33679894)
chr5 (130-204)||(33865891-33865965)
chr5 (130-205)||(33698536-33698611)
chr5 (1-64)||(33904573-33904636)
chr5 (130-205)||(33734307-33734382)
chr5 (131-205)||(33762769-33762843)
chr5 (130-205)||(33821637-33821712)
chr5 (271-357)||(33865735-33865821)
chr5 (130-205)||(33748779-33748854)
chr5 (130-205)||(33834899-33834974)
chr5 (1-44)||(33734534-33734577)
chr5 (298-340)||(33748641-33748683)
chr5 (298-340)||(33834761-33834803)
[»] scaffold0001 (3 HSPs)
scaffold0001 (270-454)||(148535-148719)
scaffold0001 (129-201)||(148788-148860)
scaffold0001 (1-38)||(149000-149037)
[»] chr8 (1 HSPs)
chr8 (130-205)||(21305875-21305950)
[»] scaffold0023 (1 HSPs)
scaffold0023 (130-205)||(114207-114282)
[»] scaffold0247 (1 HSPs)
scaffold0247 (131-204)||(22155-22228)
[»] chr7 (1 HSPs)
chr7 (129-201)||(5471193-5471265)
[»] scaffold0193 (1 HSPs)
scaffold0193 (130-205)||(25218-25293)


Alignment Details
Target: chr5 (Bit Score: 157; Significance: 3e-83; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 270 - 454
Target Start/End: Complemental strand, 33904334 - 33904150
Alignment:
Q  270 ttcatgaaattattaaacctaaacctcgaactttctcaactcatccaccttcgttgaatgggaaacataatattaatgtgacaccaattgtggtggtttc 369  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||    
T  33904334 ttcatgaaattattaaacctaaacctcgaactttctcaactcatccaccttcgttgaactggaaacataatattaatgtgacaccaattgtggcggtttc 33904235  T
Q  370 aactcaacacggtgaagtctcgcctaatcgtgataataaagagattacggattcaaaccaaattggtagagaatatgttggtgtt 454  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||    
T  33904234 aactcaacacggtgaagtctcgccaaatcgtgataataaagagattacggattcaaaccaaattggtagagatattgttggtgtt 33904150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 129 - 205
Target Start/End: Complemental strand, 33904475 - 33904399
Alignment:
Q  129 ttagatggtcattgattgctgcaaggcttccgggtagaacagctaatgatgtgaagaattattggcacacacatttg 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33904475 ttagatggtcattgattgctgcaaggcttccgggtagaacagctaatgatgtgaagaattattggcacacacatttg 33904399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 130 - 205
Target Start/End: Complemental strand, 33679894 - 33679819
Alignment:
Q  130 tagatggtcattgattgctgcaaggcttccgggtagaacagctaatgatgtgaagaattattggcacacacatttg 205  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  33679894 tagatggtcattgattgctgcgaggcttccgggtagaacagctaatgatgtgaagaattattggcacacaaatttg 33679819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 130 - 204
Target Start/End: Complemental strand, 33865965 - 33865891
Alignment:
Q  130 tagatggtcattgattgctgcaaggcttccgggtagaacagctaatgatgtgaagaattattggcacacacattt 204  Q
    |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  33865965 tagatggtcattgattgctgcaagactcccgggtagaacagctaatgatgtgaagaattattggcacacacattt 33865891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 130 - 205
Target Start/End: Complemental strand, 33698611 - 33698536
Alignment:
Q  130 tagatggtcattgattgctgcaaggcttccgggtagaacagctaatgatgtgaagaattattggcacacacatttg 205  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  33698611 tagatggtctttgattgctgcaaggcttccgggtaggacagctaatgatgtgaagaattattggcacacaaatttg 33698536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 33904636 - 33904573
Alignment:
Q  1 tgatgctaaggttacacaaacttccagggaataggtaatcttccaaggacaagttaatattcat 64  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  33904636 tgatgctaaggttacacaaacttctagggaataggtaatcttccaaggacaagttaatattcat 33904573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 130 - 205
Target Start/End: Complemental strand, 33734382 - 33734307
Alignment:
Q  130 tagatggtcattgattgctgcaaggcttccgggtagaacagctaatgatgtgaagaattattggcacacacatttg 205  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||||||| || | ||||||||||||||||    
T  33734382 tagatggtcattgattgctgcaaggcttcctggtagaactgctaatgatgtgaaaaacttttggcacacacatttg 33734307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 131 - 205
Target Start/End: Complemental strand, 33762843 - 33762769
Alignment:
Q  131 agatggtcattgattgctgcaaggcttccgggtagaacagctaatgatgtgaagaattattggcacacacatttg 205  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||||||| || |||||||||||| |||||    
T  33762843 agatggtcattgattgctgcaaggcttcccggtagaacagcgaatgatgtgaaaaactattggcacacaaatttg 33762769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 130 - 205
Target Start/End: Complemental strand, 33821712 - 33821637
Alignment:
Q  130 tagatggtcattgattgctgcaaggcttccgggtagaacagctaatgatgtgaagaattattggcacacacatttg 205  Q
    ||||||||||||||||||||||||||||||  ||||||| |||||||||||||| || |||||| |||||||||||    
T  33821712 tagatggtcattgattgctgcaaggcttcctagtagaacggctaatgatgtgaaaaactattggaacacacatttg 33821637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 271 - 357
Target Start/End: Complemental strand, 33865821 - 33865735
Alignment:
Q  271 tcatgaaattattaaacctaaacctcgaactttctcaactcatccaccttcgttgaatgggaaacataatattaatgtgacaccaat 357  Q
    ||||||| ||||||||||| ||||||||||||| ||| ||||| |||| | ||||||||||||| |||||| |  ||||||||||||    
T  33865821 tcatgaagttattaaacctcaacctcgaactttttcatctcattcaccatggttgaatgggaaatataataattttgtgacaccaat 33865735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 130 - 205
Target Start/End: Complemental strand, 33748854 - 33748779
Alignment:
Q  130 tagatggtcattgattgctgcaaggcttccgggtagaacagctaatgatgtgaagaattattggcacacacatttg 205  Q
    ||||||| | |||||||||||||| ||||  ||||||||||||||||||||||| || |||||| |||| ||||||    
T  33748854 tagatggacgttgattgctgcaagacttcaaggtagaacagctaatgatgtgaaaaactattggaacactcatttg 33748779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 130 - 205
Target Start/End: Complemental strand, 33834974 - 33834899
Alignment:
Q  130 tagatggtcattgattgctgcaaggcttccgggtagaacagctaatgatgtgaagaattattggcacacacatttg 205  Q
    ||||||| | |||||||||||||| ||||  ||||||||||||||||||||||| || |||||| |||| ||||||    
T  33834974 tagatggacgttgattgctgcaagacttcaaggtagaacagctaatgatgtgaaaaactattggaacactcatttg 33834899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 33734577 - 33734534
Alignment:
Q  1 tgatgctaaggttacacaaacttccagggaataggtaatcttcc 44  Q
    |||| ||||||||||||||||||| ||||||||||||| |||||    
T  33734577 tgatcctaaggttacacaaacttctagggaataggtaagcttcc 33734534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 340
Target Start/End: Complemental strand, 33748683 - 33748641
Alignment:
Q  298 aactttctcaactcatccaccttcgttgaatgggaaacataat 340  Q
    |||||| ||||||||| |||||| |||||||||||||||||||    
T  33748683 aactttttcaactcattcaccttggttgaatgggaaacataat 33748641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 340
Target Start/End: Complemental strand, 33834803 - 33834761
Alignment:
Q  298 aactttctcaactcatccaccttcgttgaatgggaaacataat 340  Q
    |||||| ||||||||| |||||| |||||||||||||||||||    
T  33834803 aactttttcaactcattcaccttggttgaatgggaaacataat 33834761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 125; Significance: 3e-64; HSPs: 3)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 270 - 454
Target Start/End: Complemental strand, 148719 - 148535
Alignment:
Q  270 ttcatgaaattattaaacctaaacctcgaactttctcaactcatccaccttcgttgaatgggaaacataatattaatgtgacaccaattgtggtggtttc 369  Q
    ||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||   ||||    
T  148719 ttcatgaaattattagacctcaacctcgaactttctcaactcattcaccttcgttgaatgggaaacataatattaacgcgacaccaattgtggcaatttc 148620  T
Q  370 aactcaacacggtgaagtctcgcctaatcgtgataataaagagattacggattcaaaccaaattggtagagaatatgttggtgtt 454  Q
    |||||||||| ||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||   ||||||||||    
T  148619 aactcaacactgtgaagtctcgccaaatcgtgataataaagagattacggttccaaaccaaattggtagagatattgttggtgtt 148535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 129 - 201
Target Start/End: Complemental strand, 148860 - 148788
Alignment:
Q  129 ttagatggtcattgattgctgcaaggcttccgggtagaacagctaatgatgtgaagaattattggcacacaca 201  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||| ||||||||||||||    
T  148860 ttagatggtcattgattgctggaaggcttccgggaagaacagctaatgatgtaaagaactattggcacacaca 148788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 149037 - 149000
Alignment:
Q  1 tgatgctaaggttacacaaacttccagggaataggtaa 38  Q
    |||| ||||||||||||||||||| |||||||||||||    
T  149037 tgatcctaaggttacacaaacttctagggaataggtaa 149000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 130 - 205
Target Start/End: Complemental strand, 21305950 - 21305875
Alignment:
Q  130 tagatggtcattgattgctgcaaggcttccgggtagaacagctaatgatgtgaagaattattggcacacacatttg 205  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||||    
T  21305950 tagatggtcattgattgctggaaggcttccgggtagaacagctaatgatgtgaagaactattggcacacaaatttg 21305875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 130 - 205
Target Start/End: Original strand, 114207 - 114282
Alignment:
Q  130 tagatggtcattgattgctgcaaggcttccgggtagaacagctaatgatgtgaagaattattggcacacacatttg 205  Q
    |||||||||||||||||| | ||||||||||| |||||||||||||||||| || || ||||||||||||||||||    
T  114207 tagatggtcattgattgcgggaaggcttccggctagaacagctaatgatgtcaaaaactattggcacacacatttg 114282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 131 - 204
Target Start/End: Original strand, 22155 - 22228
Alignment:
Q  131 agatggtcattgattgctgcaaggcttccgggtagaacagctaatgatgtgaagaattattggcacacacattt 204  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||||||||||| || |||||| | ||||||||    
T  22155 agatggtcattgattgctggaaggcttccaggtagaacagctaatgatgtgaaaaactattggaatacacattt 22228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 129 - 201
Target Start/End: Original strand, 5471193 - 5471265
Alignment:
Q  129 ttagatggtcattgattgctgcaaggcttccgggtagaacagctaatgatgtgaagaattattggcacacaca 201  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||  |||||| || |||||| |||||||    
T  5471193 ttagatggtcattgattgctggaaggcttccgggtagaacagctaatagtgtgaaaaactattggaacacaca 5471265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0193 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 130 - 205
Target Start/End: Original strand, 25218 - 25293
Alignment:
Q  130 tagatggtcattgattgctgcaaggcttccgggtagaacagctaatgatgtgaagaattattggcacacacatttg 205  Q
    ||||||| |||||||||||||||| |||| ||||||| |||||||||||||||| || |||||| |||| ||||||    
T  25218 tagatggacattgattgctgcaagacttcagggtagatcagctaatgatgtgaaaaactattggaacacccatttg 25293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University