View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13975_low_29 (Length: 460)

Name: NF13975_low_29
Description: NF13975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13975_low_29
NF13975_low_29
[»] chr1 (3 HSPs)
chr1 (17-451)||(34467541-34467975)
chr1 (196-331)||(15594198-15594333)
chr1 (222-392)||(29465038-29465208)
[»] chr2 (3 HSPs)
chr2 (195-339)||(16662860-16663004)
chr2 (262-384)||(43624638-43624760)
chr2 (222-335)||(7541409-7541522)
[»] chr7 (9 HSPs)
chr7 (209-291)||(13334278-13334360)
chr7 (210-331)||(17274767-17274888)
chr7 (195-323)||(8615874-8616002)
chr7 (223-339)||(17259420-17259536)
chr7 (209-331)||(8646053-8646175)
chr7 (209-385)||(3146440-3146616)
chr7 (301-346)||(17267201-17267246)
chr7 (209-331)||(8640571-8640693)
chr7 (212-317)||(10495258-10495363)
[»] chr8 (2 HSPs)
chr8 (235-345)||(43744015-43744125)
chr8 (253-292)||(43445902-43445941)
[»] chr5 (1 HSPs)
chr5 (192-292)||(28219074-28219174)
[»] chr3 (1 HSPs)
chr3 (353-385)||(53416875-53416907)


Alignment Details
Target: chr1 (Bit Score: 411; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 17 - 451
Target Start/End: Complemental strand, 34467975 - 34467541
Alignment:
Q  17 cagtcttgcctataatgtgctcaaacatactctgaatcttctttagagtatcttcaagaacatctatttcaatctgtgggtcatcctcatcaagaaaatt 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  34467975 cagtcttgcctataatgtgctcaaacatactctgaatcttctttagagtatcttcaagaatatctatttcaatctgtgggtcatcctcatcaagaaaatt 34467876  T
Q  117 tgtggctattgtaattaaagaattgatcttgtcgttttcttctgatgagtgtttcaaatcatttctcattctgttaacgcagtcaaccaattcattcatt 216  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34467875 tgtggctattgtaattaaagaattgatcttctcgttttcttccgatgagtgtttcaaatcatttctcattctgttaacgcagtcaaccaattcattcatt 34467776  T
Q  217 aactcggccttccttaagaatttcttatcttcaacacggtaatcctcagcttctcgaatcatttcttcaatttcttttgtcgacaaccttcctttgtcat 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34467775 aactcggccttccttaagaatttcttatcttcaacacggtaatcctcagcttctcgaatcatttcttcaatttcttttgtcgacaaccttcctttgtcat 34467676  T
Q  317 tggttattgtaatcttattcttagtaccagaccgtttttccttagcagaaacagttaggatgccatttttatcaatattaaagtatacattgaaaggaag 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  34467675 tggttattgtaatcttattcttagtaccagaccgtttttccttagcagaaacagttaggatgccatttttatcaatattaaagcatacattgaaaggaag 34467576  T
Q  417 gcacctacatcttcggggtaagttgtcaagaataa 451  Q
    || ||||||||| ||||||||||||||||||||||    
T  34467575 gcccctacatctacggggtaagttgtcaagaataa 34467541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 196 - 331
Target Start/End: Original strand, 15594198 - 15594333
Alignment:
Q  196 cagtcaaccaattcattcattaactcggccttccttaagaatttcttatcttcaacacggtaatcctcagcttctcgaatcatttcttcaatttcttttg 295  Q
    |||||| | ||| ||||||||| ||| |||||||||| |||||||| ||||||| |||| || ||||| |||||| ||||||||| || |||||| | ||    
T  15594198 cagtcatctaatgcattcattacctccgccttccttaggaatttctcatcttcagcacgatattcctcggcttcttgaatcatttttttaatttcatatg 15594297  T
Q  296 tcgacaaccttcctttgtcattggttattgtaatct 331  Q
      ||||||||| ||||||||||||||||||| ||||    
T  15594298 ctgacaacctttctttgtcattggttattgtgatct 15594333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 222 - 392
Target Start/End: Original strand, 29465038 - 29465208
Alignment:
Q  222 ggccttccttaagaatttcttatcttcaacacggtaatcctcagcttctcgaatcatttcttcaatttcttttgtcgacaaccttcctttgtcattggtt 321  Q
    ||||||||||| ||||| | ||||||| ||| |||| | ||||||||||  |||||||| ||||||||||   || || |||||| ||||| |||| ||     
T  29465038 ggccttccttacgaattgcatatcttccacatggtatttctcagcttctttaatcattttttcaatttctaacgttgataacctttctttgccattagta 29465137  T
Q  322 attgtaatcttattcttagtaccagaccgtttttccttagcagaaacagttaggatgccatttttatcaat 392  Q
    || || |||  |||| || |  |||    | |||||||||||| |||||||||||||||||||| ||||||    
T  29465138 atggtgatcacattcatattgtcagtagatatttccttagcagtaacagttaggatgccattttcatcaat 29465208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 7e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 195 - 339
Target Start/End: Complemental strand, 16663004 - 16662860
Alignment:
Q  195 gcagtcaaccaattcattcattaactcggccttccttaagaatttcttatcttcaacacggtaatcctcagcttctcgaatcatttcttcaatttctttt 294  Q
    ||||||| | ||| ||||||||| || ||||||||||| |||||||| ||||||| || |||| |||| ||||||| |||||| || |||||||||   |    
T  16663004 gcagtcatctaatgcattcattaccttggccttccttaggaatttctcatcttcagcatggtactccttagcttcttgaatcaatttttcaatttcgact 16662905  T
Q  295 gtcgacaaccttcctttgtcattggttattgtaatcttattctta 339  Q
     | || |||||| |||||||||||||||| || |||| |||||||    
T  16662904 ctggataacctttctttgtcattggttatcgtgatctcattctta 16662860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 262 - 384
Target Start/End: Original strand, 43624638 - 43624760
Alignment:
Q  262 tcagcttctcgaatcatttcttcaatttcttttgtcgacaaccttcctttgtcattggttattgtaatcttattcttagtaccagaccgtttttccttag 361  Q
    |||||||||| |||||| | || ||||||||  |  ||||| ||||||||||| ||||| |||||||||| |||| || ||||||    |||||| ||||    
T  43624638 tcagcttctctaatcatgtttttaatttcttgagatgacaatcttcctttgtccttggtaattgtaatctcattcctattaccagtggatttttctttag 43624737  T
Q  362 cagaaacagttaggatgccattt 384  Q
    ||||||| |||| ||||||||||    
T  43624738 cagaaacggttaagatgccattt 43624760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 222 - 335
Target Start/End: Original strand, 7541409 - 7541522
Alignment:
Q  222 ggccttccttaagaatttcttatcttcaacacggtaatcctcagcttctcgaatcatttcttcaatttcttttgtcgacaaccttcctttgtcattggtt 321  Q
    ||||||||||| ||||||||| ||||||| |||||| | |||||||||| |||| |  | || ||| || |   ||||||| ||| |||||| |||||||    
T  7541409 ggccttccttaggaatttcttgtcttcaatacggtatttctcagcttcttgaattaactttttaatatcctcactcgacaatctttctttgtgattggtt 7541508  T
Q  322 attgtaatcttatt 335  Q
    || |||||||||||    
T  7541509 atcgtaatcttatt 7541522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 209 - 291
Target Start/End: Complemental strand, 13334360 - 13334278
Alignment:
Q  209 cattcattaactcggccttccttaagaatttcttatcttcaacacggtaatcctcagcttctcgaatcatttcttcaatttct 291  Q
    ||||||||| || ||||||||||||||||||||||||||| ||| |||| |||| |||||||  |||||||| ||||||||||    
T  13334360 cattcattaccttggccttccttaagaatttcttatcttcgacatggtattccttagcttctttaatcattttttcaatttct 13334278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 210 - 331
Target Start/End: Original strand, 17274767 - 17274888
Alignment:
Q  210 attcattaactcggccttccttaagaatttcttatcttcaacacggtaatcctcagcttctcgaatcatttcttcaatttcttttgtcgacaaccttcct 309  Q
    ||||||||  || ||||| ||||||||||||||||| || | || |||| || |||||||| |||||| |  || |||||||| ||||||||||||||||    
T  17274767 attcattatttctgcctttcttaagaatttcttatcatcgatacagtaagccgcagcttcttgaatcaatctttgaatttcttctgtcgacaaccttcct 17274866  T
Q  310 ttgtcattggttattgtaatct 331  Q
    ||||| || |||||| ||||||    
T  17274867 ttgtctttagttattttaatct 17274888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 195 - 323
Target Start/End: Original strand, 8615874 - 8616002
Alignment:
Q  195 gcagtcaaccaattcattcattaactcggccttccttaagaatttcttatcttcaacacggtaatcctcagcttctcgaatcatttcttcaatttctttt 294  Q
    ||||||| | ||||||||||||| || ||||||||||| |||||| | ||||||| | ||||| ||||| |||||| |||||| || || |||||| |      
T  8615874 gcagtcatctaattcattcattaccttggccttccttaggaatttttcatcttcagcgcggtactcctctgcttcttgaatcagttttttaatttcatca 8615973  T
Q  295 gtcgacaaccttcctttgtcattggttat 323  Q
    | ||| |||||| ||||||||||||||||    
T  8615974 gccgataacctttctttgtcattggttat 8616002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 223 - 339
Target Start/End: Original strand, 17259420 - 17259536
Alignment:
Q  223 gccttccttaagaatttcttatcttcaacacggtaatcctcagcttctcgaatcatttcttcaatttcttttgtcgacaaccttcctttgtcattggtta 322  Q
    ||||| ||||||||||||| ||| || | ||||||| |||||||||||  ||||| |  || ||||| ||  | ||| ||||||||||||||||||||||    
T  17259420 gcctttcttaagaatttctcatcatcgatacggtaagcctcagcttctttaatcaatcttttaatttgttcagccgagaaccttcctttgtcattggtta 17259519  T
Q  323 ttgtaatcttattctta 339  Q
    ||||||||| |||||||    
T  17259520 ttgtaatctcattctta 17259536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 209 - 331
Target Start/End: Original strand, 8646053 - 8646175
Alignment:
Q  209 cattcattaactcggccttccttaagaatttcttatcttcaacacggtaatcctcagcttctcgaatcatttcttcaatttcttttgtcgacaaccttcc 308  Q
    |||||||||  | ||||||||||| |||||||| |||||||| ||||||||  |||||||||| | ||||||||| ||||| ||  | |||||| ||| |    
T  8646053 cattcattacattggccttccttaggaatttctcatcttcaatacggtaattttcagcttctctagtcatttctttaatttgttgagacgacaatctttc 8646152  T
Q  309 tttgtcattggttattgtaatct 331  Q
    ||| ||||| ||||||| |||||    
T  8646153 tttttcattagttattggaatct 8646175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 209 - 385
Target Start/End: Original strand, 3146440 - 3146616
Alignment:
Q  209 cattcattaactcggccttccttaagaatttcttatcttcaacacggtaatcctcagcttctcgaatcatttcttcaatttcttttgtcgacaaccttcc 308  Q
    |||||||||  | |||||||||||  ||||| | ||| |||||||||||||  |||||||||   ||||||| |  ||||||||  |  ||||| ||| |    
T  3146440 cattcattacattggccttccttagaaatttttcatcctcaacacggtaattttcagcttctttgatcatttttataatttcttgggatgacaatctttc 3146539  T
Q  309 tttgtcattggttattgtaatcttattcttagtaccagaccgtttttccttagcagaaacagttaggatgccatttt 385  Q
    ||||||||| |||| |||||||| |||| || ||||||    |||||| |||||||||||| ||| |||||||||||    
T  3146540 tttgtcattagttactgtaatctcattcgtactaccagtggatttttcattagcagaaacaattaagatgccatttt 3146616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 17267201 - 17267246
Alignment:
Q  301 aaccttcctttgtcattggttattgtaatcttattcttagtaccag 346  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||    
T  17267201 aaccttcctttgtcattggttattgtaatctcattcttactaccag 17267246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 209 - 331
Target Start/End: Complemental strand, 8640693 - 8640571
Alignment:
Q  209 cattcattaactcggccttccttaagaatttcttatcttcaacacggtaatcctcagcttctcgaatcatttcttcaatttcttttgtcgacaaccttcc 308  Q
    |||||||||| | ||||||||||| |||||||| | |||||| ||||||||  ||||| |||| | ||||||||| ||||| ||  |  ||||| ||| |    
T  8640693 cattcattaaattggccttccttaggaatttctcagcttcaatacggtaattttcagcgtctctagtcatttctttaatttgttgagatgacaatctttc 8640594  T
Q  309 tttgtcattggttattgtaatct 331  Q
    ||| ||||| ||||||| |||||    
T  8640593 tttatcattagttattggaatct 8640571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 212 - 317
Target Start/End: Complemental strand, 10495363 - 10495258
Alignment:
Q  212 tcattaactcggccttccttaagaatttcttatcttcaacacggtaatcctcagcttctcgaatcatttcttcaatttcttttgtcgacaaccttccttt 311  Q
    |||||| || ||||||||||||||||||| ||||||| ||| |||| | || |||||||  |||||||| || |||||||    | ||||||||| ||||    
T  10495363 tcattaccttggccttccttaagaatttcatatcttcgacatggtatttcttagcttctttaatcatttttttaatttctaacattgacaacctttcttt 10495264  T
Q  312 gtcatt 317  Q
    ||||||    
T  10495263 gtcatt 10495258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 235 - 345
Target Start/End: Original strand, 43744015 - 43744125
Alignment:
Q  235 aatttcttatcttcaacacggtaatcctcagcttctcgaatcatttcttcaatttcttttgtcgacaaccttcctttgtcattggttattgtaatcttat 334  Q
    ||||||| ||||| ||  |||||| | |||||||| | ||||||||||||||||||||  |  ||||| ||| |||||| ||| ||||||||||||| ||    
T  43744015 aatttctcatctttaaagcggtaaccttcagcttccctaatcatttcttcaatttcttgagatgacaatctttctttgttattagttattgtaatctcat 43744114  T
Q  335 tcttagtacca 345  Q
    || || |||||    
T  43744115 tcatactacca 43744125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 292
Target Start/End: Original strand, 43445902 - 43445941
Alignment:
Q  253 cggtaatcctcagcttctcgaatcatttcttcaatttctt 292  Q
    |||||||| |||||||||| ||||||||||||||||||||    
T  43445902 cggtaatcttcagcttctctaatcatttcttcaatttctt 43445941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 192 - 292
Target Start/End: Original strand, 28219074 - 28219174
Alignment:
Q  192 aacgcagtcaaccaattcattcattaactcggccttccttaagaatttcttatcttcaacacggtaatcctcagcttctcgaatcatttcttcaatttct 291  Q
    |||||||||| | ||| ||||||| |  | |||||||||||  ||||| | ||||| || ||||||||| |||||||| | ||||||||||| |||||||    
T  28219074 aacgcagtcatctaatgcattcatgacattggccttccttagaaatttttcatctttaaaacggtaatcttcagcttccctaatcatttctttaatttct 28219173  T
Q  292 t 292  Q
    |    
T  28219174 t 28219174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 385
Target Start/End: Complemental strand, 53416907 - 53416875
Alignment:
Q  353 tttccttagcagaaacagttaggatgccatttt 385  Q
    ||||||||||||||||||||||||| |||||||    
T  53416907 tttccttagcagaaacagttaggataccatttt 53416875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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