View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13975_low_30 (Length: 449)
Name: NF13975_low_30
Description: NF13975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13975_low_30 |
 | |
|
| [»] scaffold0554 (1 HSPs) |
| | |
|
| [»] scaffold0059 (1 HSPs) |
| | |
|
| [»] scaffold1750 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 375; Significance: 0; HSPs: 12)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 14 - 436
Target Start/End: Original strand, 23148756 - 23149178
Alignment:
| Q |
14 |
ttcttccggcaccaaaaggaatgtactcaaagttactccctttatagtcaatatcgctttcattaaatctctctggataaaacctctctggttcagtcca |
113 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
|
|
| T |
23148756 |
ttcttccggcaccaaaaggaatgtactcgaagttactccctttatagtcaatatcgctttcaatgaatctctctggataaaacctctctggttcagtcca |
23148855 |
T |
|
| Q |
114 |
gttgtttggatctcttgcaattgcccaagcattgactaacaccttagtcttaatcggtatatgataaccatttatatcacacgcttgactacattctctc |
213 |
Q |
| |
|
|| ||||| |||||||||||||||||||||||||| || ||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23148856 |
gtagtttgaatctcttgcaattgcccaagcattgattatcactttagtcttaatcggaatgtgataaccatttatatcacacgcttgactacattctctc |
23148955 |
T |
|
| Q |
214 |
ggtaacaaaagaggtgccggagggtgtagccttaaggtttctttgacaactaatttcaaataattgagttcattaatgcaattttcatcaacctttcctt |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
23148956 |
ggtaacaaaagaggtgccggagggtgtagccttaaggtttctttgacaactaatttcaaataattgagttcattgatgcaattttcatcaacctttcctt |
23149055 |
T |
|
| Q |
314 |
tcattttgaaaacctctctcacctcatcttgtgctttcttcattattcttggatcctttaccatctctaccattgcccaatcaatggtgcttgctgatgt |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
23149056 |
tcattttgaaaacctctctcacctcatcttgtgctttcttcattattcttggatcctttaccatctctaccattgcccaatctatggtgcttgctgatgt |
23149155 |
T |
|
| Q |
414 |
ctcgcctccagcaccaaaaatgt |
436 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
23149156 |
ctcgcctccagcaccaaaaatgt |
23149178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 14 - 436
Target Start/End: Original strand, 23145918 - 23146340
Alignment:
| Q |
14 |
ttcttccggcaccaaaaggaatgtactcaaagttactccctttatagtcaatatcgctttcattaaatctctctggataaaacctctctggttcagtcca |
113 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||| |
|
|
| T |
23145918 |
ttcttccagcaccaaaaggaatgtactcaaagttactccctttatagtcaatatcgctgtcgatgaatctctctggataaaacctctctggttcagtcca |
23146017 |
T |
|
| Q |
114 |
gttgtttggatctcttgcaattgcccaagcattgactaacaccttagtcttaatcggtatatgataaccatttatatcacacgcttgactacattctctc |
213 |
Q |
| |
|
|| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
23146018 |
gtagtttggatctcttgcaactgcccaagcattgactaacaccttagtcttaatcggtatgtgataaccatttatatcacattcttgactacattctctc |
23146117 |
T |
|
| Q |
214 |
ggtaacaaaagaggtgccggagggtgtagccttaaggtttctttgacaactaatttcaaataattgagttcattaatgcaattttcatcaacctttcctt |
313 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
23146118 |
ggtaacaaaagaggtgctggagggtgtagccttaaggtttctttgacaactaatttcaaataattgagttcattgatgcaattttcatcaacccttcctt |
23146217 |
T |
|
| Q |
314 |
tcattttgaaaacctctctcacctcatcttgtgctttcttcattattcttggatcctttaccatctctaccattgcccaatcaatggtgcttgctgatgt |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
23146218 |
tcattttgaaaacctctctcacctcatcttgtgctttcttcatgattcttggatcctttaccaattctaccattgcccaatctatggtgcttgctgatgt |
23146317 |
T |
|
| Q |
414 |
ctcgcctccagcaccaaaaatgt |
436 |
Q |
| |
|
||| ||||||||| ||||||||| |
|
|
| T |
23146318 |
ctcacctccagcagcaaaaatgt |
23146340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 14 - 433
Target Start/End: Original strand, 23039039 - 23039458
Alignment:
| Q |
14 |
ttcttccggcaccaaaaggaatgtactcaaagttactccctttatagtcaatatcgctttcattaaatctctctggataaaacctctctggttcagtcca |
113 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||| |||||||||||||| |||| ||| ||||||||||||||||| ||||| || |||||||| |
|
|
| T |
23039039 |
ttcttccggcaccaaaaggaatgtactcataattacttcctttatagtcaatggcgctgtcaaggaatctctctggataaaatctctccggctcagtcca |
23039138 |
T |
|
| Q |
114 |
gttgtttggatctcttgcaattgcccaagcattgactaacaccttagtcttaatcggtatatgataaccatttatatcacacgcttgactacattctctc |
213 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||| |||||||||||||| ||||| | ||||| ||||||||| |
|
|
| T |
23039139 |
gtaatttggatctcttgcaattgcccaagcattgactatcaccttactcttaataggtatgtgataaccatttatctcacatgtttgacgacattctctt |
23039238 |
T |
|
| Q |
214 |
ggtaacaaaagaggtgccggagggtgtagccttaaggtttctttgacaactaatttcaaataattgagttcattaatgcaattttcatcaacctttcctt |
313 |
Q |
| |
|
|| | ||||||||||| |||||||||| ||| | |||||||||||||||| | |||||||||||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
23039239 |
ggcagcaaaagaggtgttggagggtgtaacctcagggtttctttgacaactgacttcaaataattgagttcattgatgcaattttcatcaacccttcctt |
23039338 |
T |
|
| Q |
314 |
tcattttgaaaacctctctcacctcatcttgtgctttcttcattattcttggatcctttaccatctctaccattgcccaatcaatggtgcttgctgatgt |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||| |||||||||||||| || ||||||||||||||||| |
|
|
| T |
23039339 |
tcattttgaaaacctctctcacctcatcttgcgctttcttcattattcttggatcccttatcatttctaccattgcccagtctatggtgcttgctgatgt |
23039438 |
T |
|
| Q |
414 |
ctcgcctccagcaccaaaaa |
433 |
Q |
| |
|
||| |||||||||||||||| |
|
|
| T |
23039439 |
ctcacctccagcaccaaaaa |
23039458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 22 - 436
Target Start/End: Original strand, 23024278 - 23024692
Alignment:
| Q |
22 |
gcaccaaaaggaatgtactcaaagttactccctttatagtcaatatcgctttcattaaatctctctggataaaacctctctggttcagtccagttgtttg |
121 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||| || || | ||||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
23024278 |
gcaccaaaaggaatatactcaaagttactccctttatagtcaatatcactatcgatgaatctctctggataaaacctctctggttcggtccagtaatttg |
23024377 |
T |
|
| Q |
122 |
gatctcttgcaattgcccaagcattgactaacaccttagtcttaatcggtatatgataaccatttatatcacacgcttgactacattctctcggtaacaa |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||| | || || | |||||| | ||| | ||| | |||| |||||||||||||| || |
|
|
| T |
23024378 |
gatctcttgcaattgcccaagcattgactatcaccttagtcttagttggaatgtcataaccgtctatcttacatgattgagcacattctctcggtattaa |
23024477 |
T |
|
| Q |
222 |
aagaggtgccggagggtgtagccttaaggtttctttgacaactaatttcaaataattgagttcattaatgcaattttcatcaacctttcctttcattttg |
321 |
Q |
| |
|
||| |||||||||||||||| ||| | |||||||||||||| | ||||||||||||| |||||||| || ||||| || |||||| |||||||||| ||| |
|
|
| T |
23024478 |
aagtggtgccggagggtgtaacctcagggtttctttgacaattgatttcaaataattaagttcattgatacaattctcttcaacccttcctttcatattg |
23024577 |
T |
|
| Q |
322 |
aaaacctctctcacctcatcttgtgctttcttcattattcttggatcctttaccatctctaccattgcccaatcaatggtgcttgctgatgtctcgcctc |
421 |
Q |
| |
|
|||| ||||| ||||||| ||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
23024578 |
aaaatctctcgcacctcagcttgtgctttcttcattattcttggattctttaccatttctgccattgcccaatctatggtgcttgctgatgtctcacctc |
23024677 |
T |
|
| Q |
422 |
cagcaccaaaaatgt |
436 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
23024678 |
cagcaccaaaaatgt |
23024692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 14 - 436
Target Start/End: Original strand, 23036168 - 23036590
Alignment:
| Q |
14 |
ttcttccggcaccaaaaggaatgtactcaaagttactccctttatagtcaatatcgctttcattaaatctctctggataaaacctctctggttcagtcca |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| || | |||||||| |||||||| ||||||||||||||||| |
|
|
| T |
23036168 |
ttcttccggcaccaaaaggaatgtactcaaagttactccctttgtagtcaatagcgctgtcgatgaatctctcgggataaaatctctctggttcagtcca |
23036267 |
T |
|
| Q |
114 |
gttgtttggatctcttgcaattgcccaagcattgactaacaccttagtcttaatcggtatatgataaccatttatatcacacgcttgactacattctctc |
213 |
Q |
| |
|
|| ||||||||||||||||||||||||||||| | | |||||| ||||||| ||||| |||||||||||||| |||| |||||| ||| ||||| |
|
|
| T |
23036268 |
gtaatttggatctcttgcaattgcccaagcatttattgttaccttactcttaataggtatgtgataaccatttatcacacatgcttgaacacactctctt |
23036367 |
T |
|
| Q |
214 |
ggtaacaaaagaggtgccggagggtgtagccttaaggtttctttgacaactaatttcaaataattgagttcattaatgcaattttcatcaacctttcctt |
313 |
Q |
| |
|
|||| ||||||||||| |||||||||| ||| | |||||||||||| ||| ||||||||||| ||||||| || || ||||| || || ||| |||||| |
|
|
| T |
23036368 |
ggtagcaaaagaggtgttggagggtgtaacctcagggtttctttgacgactgatttcaaataaatgagttcgttgatacaattctcttcgacccttcctt |
23036467 |
T |
|
| Q |
314 |
tcattttgaaaacctctctcacctcatcttgtgctttcttcattattcttggatcctttaccatctctaccattgcccaatcaatggtgcttgctgatgt |
413 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||| ||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
23036468 |
tcattttgaaaacctctctcacctcagcttgtgctttcttcattattcttggattccttaccatttctgccattgcccaatctatggtgcttgctgatgt |
23036567 |
T |
|
| Q |
414 |
ctcgcctccagcaccaaaaatgt |
436 |
Q |
| |
|
||| ||||||||||||||||||| |
|
|
| T |
23036568 |
ctcacctccagcaccaaaaatgt |
23036590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 22 - 436
Target Start/End: Original strand, 23140052 - 23140466
Alignment:
| Q |
22 |
gcaccaaaaggaatgtactcaaagttactccctttatagtcaatatcgctttcattaaatctctctggataaaacctctctggttcagtccagttgtttg |
121 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||||||||| | || | | ||||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
23140052 |
gcaccaaaaggaatgtactcaaaatcactccctttatagtcaatagtgtttcccatgaatctctctggataaaatttctctggttcagtccagtagtttg |
23140151 |
T |
|
| Q |
122 |
gatctcttgcaattgcccaagcattgactaacaccttagtcttaatcggtatatgataaccatttatatcacacgcttgactacattctctcggtaacaa |
221 |
Q |
| |
|
||||||| || |||||||| |||||||| | |||||||||||||| ||||| |||||||||| ||| ||||| ||||||| ||| ||||| |||| ||| |
|
|
| T |
23140152 |
gatctctcgcgattgcccatgcattgacgaccaccttagtcttaaatggtatgtgataaccatgtatctcacatgcttgaccacactctcttggtagcaa |
23140251 |
T |
|
| Q |
222 |
aagaggtgccggagggtgtagccttaaggtttctttgacaactaatttcaaataattgagttcattaatgcaattttcatcaacctttcctttcattttg |
321 |
Q |
| |
|
|||||| |||||| ||||| ||| |||||||||||||| | | |||||||||||| ||| || || |||||||||||||||||| |||||||||||||| |
|
|
| T |
23140252 |
aagaggcaccggagtgtgtaacctcaaggtttctttgacgattgatttcaaataatggagctcgttgatgcaattttcatcaacccttcctttcattttg |
23140351 |
T |
|
| Q |
322 |
aaaacctctctcacctcatcttgtgctttcttcattattcttggatcctttaccatctctaccattgcccaatcaatggtgcttgctgatgtctcgcctc |
421 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||| ||||||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
23140352 |
aaaacctctctcacctcatcttgcactttcttcattattcttggatcccttatcatttctaccattgcccaatctatggtgcttgctgatgtctcacctc |
23140451 |
T |
|
| Q |
422 |
cagcaccaaaaatgt |
436 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
23140452 |
cagcaccaaaaatgt |
23140466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 14 - 436
Target Start/End: Original strand, 23017060 - 23017482
Alignment:
| Q |
14 |
ttcttccggcaccaaaaggaatgtactcaaagttactccctttatagtcaatatcgctttcattaaatctctctggataaaacctctctggttcagtcca |
113 |
Q |
| |
|
||||||| |||||||||||||||| || |||||||||||||||||||||||| || | ||| | |||||||||||||||||| |||||||||||||||| |
|
|
| T |
23017060 |
ttcttccaccaccaaaaggaatgtattcgaagttactccctttatagtcaataccgttgtcaatgaatctctctggataaaacttctctggttcagtcca |
23017159 |
T |
|
| Q |
114 |
gttgtttggatctcttgcaattgcccaagcattgactaacaccttagtcttaatcggtatatgataaccatttatatcacacgcttgactacattctctc |
213 |
Q |
| |
|
|| ||||||||||||||| |||||||||||||| | || |||||||||||||| ||||| |||||||||| ||| ||||| |||| || ||||||||| |
|
|
| T |
23017160 |
gtagtttggatctcttgcgattgcccaagcattaattatcaccttagtcttaactggtatgtgataaccatgtatctcacatgctttaccacattctctt |
23017259 |
T |
|
| Q |
214 |
ggtaacaaaagaggtgccggagggtgtagccttaaggtttctttgacaactaatttcaaataattgagttcattaatgcaattttcatcaacctttcctt |
313 |
Q |
| |
|
|||| |||||||||| | | ||| |||| || | |||||||||||||||| |||||| |||| |||||||||| ||||| |||||||||||| ||||| |
|
|
| T |
23017260 |
ggtagcaaaagaggtactgaaggatgtaatctaagggtttctttgacaactgatttcagataactgagttcatttatgcatttttcatcaacccgtcctt |
23017359 |
T |
|
| Q |
314 |
tcattttgaaaacctctctcacctcatcttgtgctttcttcattattcttggatcctttaccatctctaccattgcccaatcaatggtgcttgctgatgt |
413 |
Q |
| |
|
||||||| | ||| || ||||| ||||||||||||||||||||||||||||||| | ||| ||| |||| |||||||||||| |||||||||||||||| |
|
|
| T |
23017360 |
tcatttttataacatccctcacttcatcttgtgctttcttcattattcttggattccttatcatttctatcattgcccaatctgtggtgcttgctgatgt |
23017459 |
T |
|
| Q |
414 |
ctcgcctccagcaccaaaaatgt |
436 |
Q |
| |
|
||| |||||| |||| ||||||| |
|
|
| T |
23017460 |
ctcacctccaccaccgaaaatgt |
23017482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 14 - 436
Target Start/End: Original strand, 23032712 - 23033119
Alignment:
| Q |
14 |
ttcttccggcaccaaaaggaatgtactcaaagttactccctttatagtcaatatcgctttcattaaatctctctggataaaacctctctggttcagtcca |
113 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||| ||||||||||||||| |||| || | ||||||| ||||||||||||| |
|
|
| T |
23032712 |
ttcttccggcaccaaagggaatgtactcaaaattacttcctttatagtcaatagcgctgtcgatgaatctct---------------ctggttcagtcca |
23032796 |
T |
|
| Q |
114 |
gttgtttggatctcttgcaattgcccaagcattgactaacaccttagtcttaatcggtatatgataaccatttatatcacacgcttgactacattctctc |
213 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||| ||||||| | ||||| ||||| |||||||||||||| ||||| ||||||| |||||||| |
|
|
| T |
23032797 |
gtagtttggatctcttgcaattgcccaagcattgactatcaccttacttttaattggtatgtgataaccatttatctcacatgcttgaccgcattctctt |
23032896 |
T |
|
| Q |
214 |
ggtaacaaaagaggtgccggagggtgtagccttaaggtttctttgacaactaatttcaaataattgagttcattaatgcaattttcatcaacctttcctt |
313 |
Q |
| |
|
|||| |||||||||| | | |||||| | ||| | |||||||||||| ||| |||||||||||||||| || ||| ||||||||||||||||||||| |
|
|
| T |
23032897 |
ggtagcaaaagaggtactgtagggtggaacctaagggtttctttgacgactgatttcaaataattgagatcggggatgtaattttcatcaacctttcctt |
23032996 |
T |
|
| Q |
314 |
tcattttgaaaacctctctcacctcatcttgtgctttcttcattattcttggatcctttaccatctctaccattgcccaatcaatggtgcttgctgatgt |
413 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||| | |||| ||| ||| ||| ||| |||||||| ||||||||||||||||| |
|
|
| T |
23032997 |
tcattttgaaaacctctctcacctcagcttgtgctttcttcattattcgttgatctcttatcatttctgtcatcgcccaatctatggtgcttgctgatgt |
23033096 |
T |
|
| Q |
414 |
ctcgcctccagcaccaaaaatgt |
436 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
23033097 |
ctcgcctccagcaccaaaaatgt |
23033119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 184
Target Start/End: Original strand, 22946404 - 22946572
Alignment:
| Q |
16 |
cttccggcaccaaaaggaatgtactcaaagttactccctttatagtcaatatcgctttcattaaatctctctggataaaacctctctggttcagtccagt |
115 |
Q |
| |
|
|||||||||||||| |||||||||||||| || | ||||| | |||| | || ||| ||||||| || ||||||||| | ||||| |||||||| | |
|
|
| T |
22946404 |
cttccggcaccaaatggaatgtactcaaaatttgttcctttgaaatcaacagaactatcaataaatctttcaggataaaacttatctggatcagtccaat |
22946503 |
T |
|
| Q |
116 |
tgtttggatctcttgcaattgcccaagcattgactaacaccttagtcttaatcggtatatgataaccat |
184 |
Q |
| |
|
|||||||| ||| |||||||||||||||||| || |||| || | || || ||||| |||||||||| |
|
|
| T |
22946504 |
attttggatcccttccaattgcccaagcattgattatcaccctactattgattggtatgtgataaccat |
22946572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 14 - 212
Target Start/End: Complemental strand, 22941576 - 22941378
Alignment:
| Q |
14 |
ttcttccggcaccaaaaggaatgtactcaaagttactccctttatagtcaatatcgctttcattaaatctctctggataaaacctctctggttcagtcca |
113 |
Q |
| |
|
||||||| |||||||| |||||| ||||||| ||| | || ||||| || | | |||||| |||| || || |||||||| |||||||| ||| ||| |
|
|
| T |
22941576 |
ttcttccagcaccaaatggaatgaactcaaaattatttcccttataatctacacaactttcaataaacctttcaggataaaatctctctgggtcatccca |
22941477 |
T |
|
| Q |
114 |
gttgtttggatctcttgcaattgcccaagcattgactaacaccttagtcttaatcggtatatgataaccatttatatcacacgcttgactacattctct |
212 |
Q |
| |
|
| |||||||||||| |||| ||||||||||| |||| ||| || | |||| ||||||| ||| |||||||| ||||| ||||| | ||||||||| |
|
|
| T |
22941476 |
atgatttggatctcttccaatggcccaagcattcactatcactttgcttttaaaaggtatatcatacccatttatttcacatgcttgtccacattctct |
22941378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 14 - 184
Target Start/End: Original strand, 22971949 - 22972119
Alignment:
| Q |
14 |
ttcttccggcaccaaaaggaatgtactcaaagttactccctttatagtcaatatcgctttcattaaatctctctggataaaacctctctggttcagtcca |
113 |
Q |
| |
|
||||||| |||||||| |||||||||||||| || | ||||| | |||| | || ||| ||||||| || ||||||||| | ||||| |||||||| |
|
|
| T |
22971949 |
ttcttccagcaccaaatggaatgtactcaaaatttgttcctttgaaatcaagagaactatcaataaatctttcaggataaaacttatctggatcagtcca |
22972048 |
T |
|
| Q |
114 |
gttgtttggatctcttgcaattgcccaagcattgactaacaccttagtcttaatcggtatatgataaccat |
184 |
Q |
| |
|
| |||||||| ||| |||||||||||||||||| || |||| || | || || ||||| |||||||||| |
|
|
| T |
22972049 |
atattttggatcccttccaattgcccaagcattgattatcaccctacttttgattggtatgtgataaccat |
22972119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 380
Target Start/End: Original strand, 22946684 - 22946768
Alignment:
| Q |
296 |
tttcatcaacctttcctttcattttgaaaacctctctcacctcatcttgtgctttcttcattattcttggatcctttaccatctc |
380 |
Q |
| |
|
||||||||| |||||| | ||||||| | | ||||||| ||| |||||||||||||||||| |||| ||||||| | |||||| |
|
|
| T |
22946684 |
tttcatcaatttttcctctttttttgaataacactctcacttcagcttgtgctttcttcattactctttgatccttcatcatctc |
22946768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 14 - 436
Target Start/End: Original strand, 21779811 - 21780233
Alignment:
| Q |
14 |
ttcttccggcaccaaaaggaatgtactcaaagttactccctttatagtcaatatcgctttcattaaatctctctggataaaacctctctggttcagtcca |
113 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||| || | |||||||||||||||||| |||||||||||||||| |
|
|
| T |
21779811 |
ttcttccggcaccaaatggaatgtactcaaaattactccctttaaagtcaatatcgctatcgatgaatctctctggataaaacatctctggttcagtcca |
21779910 |
T |
|
| Q |
114 |
gttgtttggatctcttgcaattgcccaagcattgactaacaccttagtcttaatcggtatatgataaccatttatatcacacgcttgactacattctctc |
213 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| || |||||||||||||||||| || || ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
21779911 |
gtagtttggatctcttgcaattgcccaagcattgattatcaccttagtcttaatcggaatgtggtaaccatttatatcacatgcttgactacattctctc |
21780010 |
T |
|
| Q |
214 |
ggtaacaaaagaggtgccggagggtgtagccttaaggtttctttgacaactaatttcaaataattgagttcattaatgcaattttcatcaacctttcctt |
313 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
21780011 |
ggtaacaaaagaggtgctggagggtgtagccttaaggtttctttgacaactgatttcaaataattgagttcattgatgcaattttcatcaacccttcctt |
21780110 |
T |
|
| Q |
314 |
tcattttgaaaacctctctcacctcatcttgtgctttcttcattattcttggatcctttaccatctctaccattgcccaatcaatggtgcttgctgatgt |
413 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
21780111 |
tcattttgaaaacttctctcacttcatcttgtgctttcttcattattcttggatcccttaccatttctaccattgcccaatctatggtgcttgctgatgt |
21780210 |
T |
|
| Q |
414 |
ctcgcctccagcaccaaaaatgt |
436 |
Q |
| |
|
||| |||||||||||||| |||| |
|
|
| T |
21780211 |
ctcacctccagcaccaaacatgt |
21780233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0554 (Bit Score: 223; Significance: 1e-122; HSPs: 1)
Name: scaffold0554
Description:
Target: scaffold0554; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 14 - 436
Target Start/End: Complemental strand, 6756 - 6334
Alignment:
| Q |
14 |
ttcttccggcaccaaaaggaatgtactcaaagttactccctttatagtcaatatcgctttcattaaatctctctggataaaacctctctggttcagtcca |
113 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||| |||||||||||||||| ||| ||| | ||||||||||||||||||||||||||||||||||| |
|
|
| T |
6756 |
ttcttccagcaccaaaaggaatgtactcaaaattaccccctttatagtcaatagtgctgtcagtgaatctctctggataaaacctctctggttcagtcca |
6657 |
T |
|
| Q |
114 |
gttgtttggatctcttgcaattgcccaagcattgactaacaccttagtcttaatcggtatatgataaccatttatatcacacgcttgactacattctctc |
213 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| || ||||||| || ||| |||||| | |||||||||||| ||||| |||| || ||||||||| |
|
|
| T |
6656 |
gaagtttggatctcttgcaattgcccaagcattgattatcaccttactcctaaacggtatgttataaccatttatctcacatgctttaccacattctctt |
6557 |
T |
|
| Q |
214 |
ggtaacaaaagaggtgccggagggtgtagccttaaggtttctttgacaactaatttcaaataattgagttcattaatgcaattttcatcaacctttcctt |
313 |
Q |
| |
|
|||| |||||||||||| |||||||||| ||| | |||||||||||| ||| |||||||||||||||||| ||||| ||||||||||||||||||| | |
|
|
| T |
6556 |
ggtagcaaaagaggtgctggagggtgtaacctaagggtttctttgacgactgatttcaaataattgagtttgctaatgtaattttcatcaacctttccat |
6457 |
T |
|
| Q |
314 |
tcattttgaaaacctctctcacctcatcttgtgctttcttcattattcttggatcctttaccatctctaccattgcccaatcaatggtgcttgctgatgt |
413 |
Q |
| |
|
||| | | ||||| |||| ||||||| ||||||||||| ||||||||||||| ||| ||| ||| ||| ||||||||||||| |||||| |||||||||| |
|
|
| T |
6456 |
tcaatgtaaaaacttctcgcacctcagcttgtgctttcatcattattcttggctcccttatcatttctgccattgcccaatctatggtggttgctgatgt |
6357 |
T |
|
| Q |
414 |
ctcgcctccagcaccaaaaatgt |
436 |
Q |
| |
|
|| ||||||||||||||||||| |
|
|
| T |
6356 |
atcacctccagcaccaaaaatgt |
6334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 123; Significance: 5e-63; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 14 - 436
Target Start/End: Complemental strand, 15885964 - 15885542
Alignment:
| Q |
14 |
ttcttccggcaccaaaaggaatgtactcaaagttactccctttatagtcaatatcgctttcattaaatctctctggataaaacctctctggttcagtcca |
113 |
Q |
| |
|
||||||| | ||||||||||||||||||||| ||| ||||||||||||||||| ||| || | ||||||||||||||||||||||||||||||||||| |
|
|
| T |
15885964 |
ttcttccagaaccaaaaggaatgtactcaaaattattccctttatagtcaatagagctaccaatgaatctctctggataaaacctctctggttcagtcca |
15885865 |
T |
|
| Q |
114 |
gttgtttggatctcttgcaattgcccaagcattgactaacaccttagtcttaatcggtatatgataaccatttatatcacacgcttgactacattctctc |
213 |
Q |
| |
|
| |||||||||||| |||| ||||| |||||||||| |||||| | || | |||||||||||||||| || ||||| ||||| ||||||||| |
|
|
| T |
15885864 |
atactttggatctcttccaatcgcccatgcattgactatcaccttgcttttggttggtatatgataaccatcaatctcacatgcttgttcacattctctt |
15885765 |
T |
|
| Q |
214 |
ggtaacaaaagaggtgccggagggtgtagccttaaggtttctttgacaactaatttcaaataattgagttcattaatgcaattttcatcaacctttcctt |
313 |
Q |
| |
|
|| | |||||||| || |||||||||| ||||||||| ||||| |||||| | ||||||||| |||| |||||||| | || ||| |||| |||||| |
|
|
| T |
15885764 |
ggaagtaaaagaggagctggagggtgtaaccttaaggtctctttcacaactgacttcaaataagtgagctcattaatatagttctcaccaacaattcctt |
15885665 |
T |
|
| Q |
314 |
tcattttgaaaacctctctcacctcatcttgtgctttcttcattattcttggatcctttaccatctctaccattgcccaatcaatggtgcttgctgatgt |
413 |
Q |
| |
|
| | ||||| | ||||| || |||||||||||||||||||| | |||| |||| |||||| |||| ||||||||||| | |||||| | ||||| |
|
|
| T |
15885664 |
ttgtgttgaacatttctcttacttcatcttgtgctttcttcatcactctttcatcccttaccaactctgccattgcccaaactatggtggtactcgatgt |
15885565 |
T |
|
| Q |
414 |
ctcgcctccagcaccaaaaatgt |
436 |
Q |
| |
|
|| |||||||||||||| |||| |
|
|
| T |
15885564 |
atctcctccagcaccaaacatgt |
15885542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 14 - 430
Target Start/End: Original strand, 12609903 - 12610319
Alignment:
| Q |
14 |
ttcttccggcaccaaaaggaatgtactcaaagttactccctttatagtcaatatcgctttcattaaatctctctggataaaacctctctggttcagtcca |
113 |
Q |
| |
|
||||||| |||||||| |||||||||||||| ||| ||||||| ||||||||| ||| | | |||||||| ||||||||| |||||||||||||||| |
|
|
| T |
12609903 |
ttcttccagcaccaaagggaatgtactcaaaattattccctttgtagtcaatagagctaccgatgaatctctccggataaaacttctctggttcagtcca |
12610002 |
T |
|
| Q |
114 |
gttgtttggatctcttgcaattgcccaagcattgactaacaccttagtcttaatcggtatatgataaccatttatatcacacgcttgactacattctctc |
213 |
Q |
| |
|
|| |||||||||||| |||| ||||| |||||||||| |||||| | || || |||||| |||| |||| || ||||| ||||| | ||||||||| |
|
|
| T |
12610003 |
gtactttggatctcttccaatcgcccatgcattgactatcaccttgcttttgattggtatacgatacccatcaatctcacatgcttgtccacattctctt |
12610102 |
T |
|
| Q |
214 |
ggtaacaaaagaggtgccggagggtgtagccttaaggtttctttgacaactaatttcaaataattgagttcattaatgcaattttcatcaacctttcctt |
313 |
Q |
| |
|
|| | |||||||| | ||||| |||| ||||||||| ||||| |||||| | || |||||| |||||||||| || |||||||| ||||| ||||||| |
|
|
| T |
12610103 |
ggaagtaaaagaggacctggaggatgtaaccttaaggtctctttcacaactgactttaaataagtgagttcatttatacaattttcttcaacatttcctt |
12610202 |
T |
|
| Q |
314 |
tcattttgaaaacctctctcacctcatcttgtgctttcttcattattcttggatcctttaccatctctaccattgcccaatcaatggtgcttgctgatgt |
413 |
Q |
| |
|
|||| ||||| | ||||| ||||||||||||||||||||||| | |||| |||| |||||| |||| |||||||||| | || || |||||||| |
|
|
| T |
12610203 |
tcatgttgaatatatctcttacctcatcttgtgctttcttcatcactcttttatcccttaccaactctgacattgcccaaactatagtagaagctgatgt |
12610302 |
T |
|
| Q |
414 |
ctcgcctccagcaccaa |
430 |
Q |
| |
|
|| ||||||||||||| |
|
|
| T |
12610303 |
atcacctccagcaccaa |
12610319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 14 - 430
Target Start/End: Original strand, 12636999 - 12637412
Alignment:
| Q |
14 |
ttcttccggcaccaaaaggaatgtactcaaagttactccctttatagtcaatatcgctttcattaaatctctctggataaaacctctctggttcagtcca |
113 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||| | ||||| ||||||||| ||| || | ||||||||||||| ||||||||||||||||||||| |
|
|
| T |
12636999 |
ttcttcctgcaccaaaaggaatgtactcaaaattatttcctttgtagtcaatagagctaccaatgaatctctctggatgaaacctctctggttcagtcca |
12637098 |
T |
|
| Q |
114 |
gttgtttggatctcttgcaattgcccaagcattgactaacaccttagtcttaatcggtatatgataaccatttatatcacacgcttgactacattctctc |
213 |
Q |
| |
|
|| ||||||||||| |||||| ||| ||||| |||| ||||||| | || ||||||||||| || | || ||||| ||||| | ||||||||| |
|
|
| T |
12637099 |
gtactttggatctctaccaattgtccatgcatttactatcaccttacttttggctggtatatgatacccttcaatttcacatgcttgtccacattctcta |
12637198 |
T |
|
| Q |
214 |
ggtaacaaaagaggtgccggagggtgtagccttaaggtttctttgacaactaatttcaaataattgagttcattaatgcaattttcatcaacctttcctt |
313 |
Q |
| |
|
|| |||||||| | |||||||||| ||||| || ||||| || ||||| |||||||| | ||||||||| || | |||||| |||| |||||| |
|
|
| T |
12637199 |
agt---aaaagaggagttggagggtgtaaccttagagtctctttcactactaacttcaaatattcgagttcatttatatagttttcaccaacagttcctt |
12637295 |
T |
|
| Q |
314 |
tcattttgaaaacctctctcacctcatcttgtgctttcttcattattcttggatcctttaccatctctaccattgcccaatcaatggtgcttgctgatgt |
413 |
Q |
| |
|
|| | ||||| | | |||||| |||| ||||||||||||||| | |||||||||| |||| | |||| ||||||||||| | ||||| | | |||||| |
|
|
| T |
12637296 |
tcttgttgaatatttttctcacttcatattgtgctttcttcatcactcttggatcccttactaactctgccattgcccaaactatggtagtggatgatgt |
12637395 |
T |
|
| Q |
414 |
ctcgcctccagcaccaa |
430 |
Q |
| |
|
|| ||||||||||||| |
|
|
| T |
12637396 |
ttcacctccagcaccaa |
12637412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 17 - 393
Target Start/End: Original strand, 62154 - 62530
Alignment:
| Q |
17 |
ttccggcaccaaaaggaatgtactcaaagttactccctttatagtcaatatcgctttcattaaatctctctggataaaacctctctggttcagtccagtt |
116 |
Q |
| |
|
|||| |||||||||||||||||||| || ||| |||| || ||||||||| || || | ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
62154 |
ttccagcaccaaaaggaatgtactcgaaattattcccgttgtagtcaatagaactaccaatgaatctctctggataaaacctctctggttccgtccagta |
62253 |
T |
|
| Q |
117 |
gtttggatctcttgcaattgcccaagcattgactaacaccttagtcttaatcggtatatgataaccatttatatcacacgcttgactacattctctcggt |
216 |
Q |
| |
|
||||||||||| | |||||||| ||||| |||| || ||| || || || ||||||||||| |||| || ||||| |||| ||||||||||| || |
|
|
| T |
62254 |
ccttggatctcttccgattgcccatgcattaactatcagctttgttttcattggtatatgatacccatcaatctcacatgcttctctacattctcttgga |
62353 |
T |
|
| Q |
217 |
aacaaaagaggtgccggagggtgtagccttaaggtttctttgacaactaatttcaaataattgagttcattaatgcaattttcatcaacctttcctttca |
316 |
Q |
| |
|
| ||||||| | || ||||||| ||| | ||| ||||| |||| | | |||| || |||||||||| || ||| ||||||||| ||| |||| |
|
|
| T |
62354 |
agtaaaagagcacctggggggtgtaacctcagggtctctttcacaattgacttcacgtatttgagttcatgcatacaactttcatcaaaagctcccttca |
62453 |
T |
|
| Q |
317 |
ttttgaaaacctctctcacctcatcttgtgctttcttcattattcttggatcctttaccatctctaccattgcccaa |
393 |
Q |
| |
|
| ||| | | |||||||| |||||||||||||||||||| | ||||||||| |||||| |||| ||||||||||| |
|
|
| T |
62454 |
tgttgtatatttctctcacttcatcttgtgctttcttcatcactcttggatctcttaccaactctgccattgcccaa |
62530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 341 - 394
Target Start/End: Original strand, 23610542 - 23610595
Alignment:
| Q |
341 |
cttgtgctttcttcattattcttggatcctttaccatctctaccattgcccaat |
394 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||||| |||||||||||| |
|
|
| T |
23610542 |
cttgtgctttcttcaaaattcttggatcctttatcatctcagccattgcccaat |
23610595 |
T |
|
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Target: scaffold1750 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold1750
Description:
Target: scaffold1750; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 151
Target Start/End: Complemental strand, 1209 - 1179
Alignment:
| Q |
121 |
ggatctcttgcaattgcccaagcattgacta |
151 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
1209 |
ggatctcttgcaattgcccaagcattgacta |
1179 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 151
Target Start/End: Complemental strand, 35650223 - 35650193
Alignment:
| Q |
121 |
ggatctcttgcaattgcccaagcattgacta |
151 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
35650223 |
ggatctcttgcaattgcccaagcattgacta |
35650193 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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