View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13975_low_31 (Length: 449)

Name: NF13975_low_31
Description: NF13975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13975_low_31
NF13975_low_31
[»] chr8 (27 HSPs)
chr8 (158-432)||(24067140-24067412)
chr8 (158-432)||(37131093-37131353)
chr8 (162-421)||(35879724-35879972)
chr8 (223-432)||(17234748-17234959)
chr8 (158-416)||(7760858-7761103)
chr8 (332-426)||(33177814-33177908)
chr8 (370-432)||(19484249-19484310)
chr8 (252-304)||(12737690-12737742)
chr8 (252-304)||(27878218-27878270)
chr8 (252-304)||(27915162-27915214)
chr8 (252-304)||(27961581-27961633)
chr8 (252-304)||(28018399-28018451)
chr8 (252-304)||(44977172-44977224)
chr8 (370-421)||(8029846-8029896)
chr8 (252-303)||(41394306-41394357)
chr8 (252-304)||(8029460-8029511)
chr8 (252-303)||(6387508-6387559)
chr8 (252-303)||(27974574-27974625)
chr8 (252-303)||(28031843-28031894)
chr8 (370-432)||(10294996-10295057)
chr8 (370-424)||(12522439-12522492)
chr8 (386-432)||(12522528-12522574)
chr8 (370-432)||(28317077-28317138)
chr8 (370-432)||(31625791-31625852)
chr8 (267-304)||(27869562-27869599)
chr8 (256-304)||(24082640-24082688)
chr8 (179-215)||(42423758-42423794)
[»] chr3 (26 HSPs)
chr3 (158-432)||(25049905-25050177)
chr3 (342-426)||(45602393-45602478)
chr3 (180-304)||(21718271-21718396)
chr3 (348-432)||(7665625-7665709)
chr3 (252-304)||(33693707-33693759)
chr3 (338-432)||(9818537-9818631)
chr3 (370-432)||(8598693-8598754)
chr3 (370-432)||(49296150-49296211)
chr3 (252-304)||(4962317-4962369)
chr3 (380-428)||(21386499-21386547)
chr3 (252-304)||(43173344-43173396)
chr3 (252-304)||(49458807-49458859)
chr3 (370-427)||(33693295-33693351)
chr3 (380-421)||(49458403-49458444)
chr3 (370-427)||(53836001-53836057)
chr3 (370-430)||(22489490-22489549)
chr3 (338-421)||(49293848-49293931)
chr3 (252-302)||(21386095-21386145)
chr3 (370-432)||(26107810-26107871)
chr3 (370-427)||(4962737-4962793)
chr3 (379-432)||(39038571-39038624)
chr3 (383-432)||(43172961-43173010)
chr3 (370-427)||(48379636-48379692)
chr3 (379-432)||(52617638-52617691)
chr3 (252-304)||(7437156-7437207)
chr3 (158-215)||(7667323-7667376)
[»] chr2 (27 HSPs)
chr2 (155-304)||(15926489-15926639)
chr2 (1-95)||(15926699-15926793)
chr2 (223-426)||(3858278-3858483)
chr2 (361-432)||(15926412-15926483)
chr2 (179-301)||(43617911-43618034)
chr2 (232-304)||(32294296-32294368)
chr2 (326-424)||(43318722-43318820)
chr2 (332-427)||(1833673-1833768)
chr2 (339-432)||(13898510-13898603)
chr2 (339-432)||(14039127-14039220)
chr2 (367-421)||(32293957-32294011)
chr2 (367-432)||(32242208-32242273)
chr2 (380-432)||(15224264-15224316)
chr2 (337-432)||(19948572-19948667)
chr2 (338-432)||(3991807-3991901)
chr2 (338-432)||(38413427-38413521)
chr2 (370-432)||(18899934-18899995)
chr2 (158-215)||(3858036-3858089)
chr2 (252-304)||(18727249-18727301)
chr2 (232-304)||(32294424-32294495)
chr2 (370-432)||(11153356-11153417)
chr2 (255-301)||(40830077-40830123)
chr2 (338-427)||(41978876-41978965)
chr2 (338-426)||(33262893-33262981)
chr2 (243-304)||(38295321-38295382)
chr2 (322-350)||(1833653-1833681)
chr2 (252-304)||(31846774-31846826)
[»] chr4 (26 HSPs)
chr4 (162-421)||(24453925-24454173)
chr4 (158-432)||(871843-872105)
chr4 (337-427)||(55165564-55165654)
chr4 (252-304)||(26490883-26490935)
chr4 (370-432)||(29469197-29469258)
chr4 (370-432)||(42937419-42937480)
chr4 (252-304)||(24966099-24966151)
chr4 (252-304)||(33139237-33139289)
chr4 (338-432)||(54561253-54561347)
chr4 (370-432)||(8084243-8084304)
chr4 (370-432)||(41725596-41725657)
chr4 (255-304)||(46862555-46862604)
chr4 (370-427)||(50517232-50517288)
chr4 (340-432)||(51967311-51967403)
chr4 (158-215)||(17503384-17503437)
chr4 (227-299)||(50517561-50517632)
chr4 (381-432)||(23671392-23671443)
chr4 (370-432)||(29855999-29856060)
chr4 (370-424)||(37916280-37916333)
chr4 (370-427)||(26491131-26491187)
chr4 (379-432)||(49834499-49834552)
chr4 (380-432)||(6487335-6487387)
chr4 (349-432)||(26448665-26448748)
chr4 (370-426)||(46286749-46286804)
chr4 (380-432)||(49501199-49501251)
chr4 (380-432)||(49507264-49507316)
[»] chr5 (15 HSPs)
chr5 (158-386)||(21489971-21490199)
chr5 (359-432)||(16548839-16548912)
chr5 (365-416)||(29758756-29758806)
chr5 (370-432)||(7125171-7125232)
chr5 (158-277)||(16548703-16548818)
chr5 (370-421)||(28623173-28623223)
chr5 (223-304)||(16497489-16497571)
chr5 (370-432)||(37798126-37798187)
chr5 (252-304)||(29716508-29716560)
chr5 (158-215)||(29759173-29759226)
chr5 (370-432)||(1460804-1460865)
chr5 (370-432)||(2675080-2675141)
chr5 (370-432)||(5651193-5651254)
chr5 (370-432)||(21238765-21238826)
chr5 (338-432)||(33892813-33892909)
[»] chr7 (23 HSPs)
chr7 (189-432)||(33496924-33497159)
chr7 (223-432)||(26201654-26201856)
chr7 (364-432)||(11735188-11735256)
chr7 (348-407)||(27148904-27148963)
chr7 (252-304)||(31445786-31445838)
chr7 (252-301)||(42610956-42611005)
chr7 (252-304)||(16709979-16710031)
chr7 (252-304)||(17684215-17684267)
chr7 (256-304)||(21486578-21486626)
chr7 (252-304)||(23017425-23017477)
chr7 (252-304)||(43172507-43172559)
chr7 (326-432)||(14732255-14732361)
chr7 (370-432)||(14741460-14741521)
chr7 (370-432)||(44256418-44256479)
chr7 (338-421)||(19594255-19594338)
chr7 (179-215)||(26201359-26201395)
chr7 (370-421)||(21067872-21067922)
chr7 (340-410)||(34656661-34656731)
chr7 (370-432)||(4639879-4639940)
chr7 (370-427)||(7993643-7993699)
chr7 (186-215)||(27149246-27149275)
chr7 (370-426)||(37328394-37328449)
chr7 (252-304)||(42043750-42043801)
[»] chr1 (28 HSPs)
chr1 (191-432)||(49971428-49971662)
chr1 (179-353)||(52182441-52182616)
chr1 (342-432)||(27257833-27257924)
chr1 (370-432)||(26757670-26757731)
chr1 (369-427)||(52182386-52182444)
chr1 (252-304)||(19863299-19863351)
chr1 (370-432)||(1243311-1243372)
chr1 (370-432)||(4005122-4005183)
chr1 (370-432)||(8147372-8147433)
chr1 (370-432)||(41353476-41353537)
chr1 (338-432)||(33886832-33886926)
chr1 (338-432)||(33957324-33957418)
chr1 (370-421)||(51106958-51107008)
chr1 (370-432)||(9192079-9192140)
chr1 (370-432)||(45273049-45273110)
chr1 (370-432)||(47371580-47371641)
chr1 (252-304)||(42303987-42304040)
chr1 (252-301)||(47371176-47371225)
chr1 (370-430)||(35177215-35177274)
chr1 (252-304)||(49236604-49236656)
chr1 (338-432)||(34019174-34019268)
chr1 (338-432)||(34751544-34751638)
chr1 (370-432)||(5209373-5209434)
chr1 (370-416)||(11579105-11579150)
chr1 (348-432)||(1108407-1108491)
chr1 (267-304)||(28403602-28403639)
chr1 (252-304)||(3593678-3593730)
chr1 (252-304)||(49452667-49452718)
[»] chr6 (15 HSPs)
chr6 (332-432)||(31996214-31996314)
chr6 (252-304)||(28900438-28900490)
chr6 (370-432)||(1463676-1463737)
chr6 (370-432)||(6788134-6788195)
chr6 (252-304)||(16439142-16439194)
chr6 (339-426)||(21199594-21199681)
chr6 (348-432)||(8779563-8779647)
chr6 (380-421)||(31535074-31535115)
chr6 (371-432)||(31975658-31975718)
chr6 (377-432)||(13461407-13461462)
chr6 (370-432)||(2606929-2606990)
chr6 (380-432)||(10113794-10113846)
chr6 (383-427)||(16438745-16438789)
chr6 (252-304)||(24194913-24194965)
chr6 (179-215)||(28041946-28041982)
[»] scaffold0473 (1 HSPs)
scaffold0473 (223-297)||(1546-1620)
[»] scaffold0573 (1 HSPs)
scaffold0573 (252-304)||(9304-9356)
[»] scaffold0421 (1 HSPs)
scaffold0421 (338-432)||(1733-1828)
[»] scaffold0110 (1 HSPs)
scaffold0110 (379-427)||(39301-39349)
[»] scaffold0013 (2 HSPs)
scaffold0013 (370-426)||(89320-89375)
scaffold0013 (252-300)||(89730-89778)
[»] scaffold1128 (1 HSPs)
scaffold1128 (370-432)||(910-971)
[»] scaffold0383 (1 HSPs)
scaffold0383 (370-432)||(16687-16748)
[»] scaffold0152 (2 HSPs)
scaffold0152 (370-432)||(20923-20984)
scaffold0152 (370-432)||(28817-28878)
[»] scaffold0116 (1 HSPs)
scaffold0116 (223-300)||(5069-5146)


Alignment Details
Target: chr8 (Bit Score: 128; Significance: 5e-66; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 158 - 432
Target Start/End: Complemental strand, 24067412 - 24067140
Alignment:
Q  158 aaaggttttcaaccaccatatataataaagcattatgttcaactaaacatcaaaatacnnnnnnn-cttgcaaaatcataagtcgcttaagttttaacca 256  Q
    ||||||||||||||||||||    ||||| ||||||||||||||||||| ||||||||        |||||||||| |||| || ||||||| |||||||    
T  24067412 aaaggttttcaaccaccata----ataaatcattatgttcaactaaacaccaaaatacaaaataaacttgcaaaataataaatctcttaagtcttaacca 24067317  T
Q  257 tccaaaaaggcaagtttcacatgttcctaaagttattaataaaactatnnnnnnnnn-ttagacttacattccgattttactcgagtttacccgagttta 355  Q
    | |||||||||||||||| || |||||||||||| |||||||||||||          ||||||||||||||||||||||||||||||||||||||||||    
T  24067316 ttcaaaaaggcaagtttctcaagttcctaaagttgttaataaaactataaaaaataaattagacttacattccgattttactcgagtttacccgagttta 24067217  T
Q  356 ccgagtttgaccgagttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctctgagt 432  Q
    |||| |||||||||||||||||||||| ||||||||||||||  |||||||||||||||| ||||| ||||| ||||    
T  24067216 ccgattttgaccgagttaactcgagtcgaactcgtcaaacatgccgattttaccagaaattgagttcacctccgagt 24067140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 158 - 432
Target Start/End: Original strand, 37131093 - 37131353
Alignment:
Q  158 aaaggttttcaaccaccatatataataaagcattatgttcaactaaacatcaaaatacnnnnnnn-cttgcaaaatcataagtcgcttaagttttaacca 256  Q
    ||||||||||||||||||||    ||||||||||||||||||||||||||||||||||        |||||||||||||||||| ||||||| |||||||    
T  37131093 aaaggttttcaaccaccata----ataaagcattatgttcaactaaacatcaaaatacaaaataaacttgcaaaatcataagtctcttaagtcttaacca 37131188  T
Q  257 tccaaaaaggcaagtttcacatgttcctaaagttattaataaaactatnnnnnnnnnttagacttacattccgattttactcgagtttacccgagtttac 356  Q
    ||||||||||||||||||||| ||||||||| || |||||||||||||         |||||||||||||| |||||||| |||||||||||||          
T  37131189 tccaaaaaggcaagtttcacaagttcctaaaattgttaataaaactat-aaaaaaaattagacttacattctgattttacccgagtttacccga------ 37131281  T
Q  357 cgagtttgaccgagttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctctgagt 432  Q
        ||| |||||||||||||||||||||||| |||||||||  ||||||||||||| ||||||| ||||| ||||    
T  37131282 ----ttttaccgagttaactcgagtcaaactcttcaaacattctgattttaccagaagtcgagtttacctccgagt 37131353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 162 - 421
Target Start/End: Complemental strand, 35879972 - 35879724
Alignment:
Q  162 gttttcaaccaccatatataataaagcattatgttcaactaaacatcaaaatac-nnnnnnncttgcaaaatcataagtcgcttaagttttaaccatcca 260  Q
    |||||||||||||    ||||||||||||||||||||| |||||||||||||||        |||| ||||||||||||| ||||||| |||||||||||    
T  35879972 gttttcaaccacc----ataataaagcattatgttcaattaaacatcaaaatacaaaataaacttgtaaaatcataagtctcttaagtcttaaccatcca 35879877  T
Q  261 aaaaggcaagtttcacatgttcctaaagttattaataaaactat-nnnnnnnnnttagacttacattccgattttactcgagtttacccgagtttaccga 359  Q
    ||||||||||||||||| |||||||| ||| |||||||||||||          |||||||||||||||||||||||||||||||| || |||||||       
T  35879876 aaaaggcaagtttcacacgttcctaacgttgttaataaaactatataaaaaattttagacttacattccgattttactcgagtttaaccaagtttac--- 35879780  T
Q  360 gtttgaccgagttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagtt 421  Q
          ||||||||||||||||||||||||||||||||| | |||||||| |||||||||||    
T  35879779 ------ccgagttaactcgagtcaaactcgtcaaacattccaattttaccggaaatcgagtt 35879724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 223 - 432
Target Start/End: Complemental strand, 17234959 - 17234748
Alignment:
Q  223 cttgcaaaatcataagtcgcttaagttttaaccatccaaaaaggcaagtttcacatgttcctaaagttattaataaaactatnnnnnnnnn----ttaga 318  Q
    ||||||||||||||||||  |||||| |||||||||||||||||||||||||||| ||||  |||||| ||||| |||||||             |||||    
T  17234959 cttgcaaaatcataagtc--ttaagtcttaaccatccaaaaaggcaagtttcacaagttcacaaagttgttaatcaaactatcaaaaaaaaaaaattaga 17234862  T
Q  319 cttacattccgattttactcgagtttacccgagtttaccg-agtttgaccgagttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcg 417  Q
    ||||||||||||||||||| ||||||||| |||||||||  ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  17234861 cttacattccgattttacttgagtttacctgagtttaccctagttt-accgagttaactcgagtcaaactcgtcaaacattccgattttaccagaaatcg 17234763  T
Q  418 agttaacctctgagt 432  Q
    |||| ||||| ||||    
T  17234762 agtttacctccgagt 17234748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 158 - 416
Target Start/End: Complemental strand, 7761103 - 7760858
Alignment:
Q  158 aaaggttttcaaccaccatatataataaagcattatgttcaactaaacatcaaaatacnnnnnnn-cttgcaaaatcataagtcgcttaagttttaacca 256  Q
    ||||||||||||||||||||    ||||||||| ||||||||||||||||||||||||        |||||||||||||||||| ||||||| |||| ||    
T  7761103 aaaggttttcaaccaccata----ataaagcat-atgttcaactaaacatcaaaatacagaataagcttgcaaaatcataagtctcttaagtcttaaaca 7761009  T
Q  257 tccaaaaaggcaagtttcacatgttcctaaagttattaataaaactat-nnnnnnnnnttagacttacattccgattttactcgagtttacccgagttta 355  Q
    | ||||||||||||||||||| ||||||| |||| |||||||||||||          ||||| |||||||  |||||||||          ||||||||    
T  7761008 ttcaaaaaggcaagtttcacaagttcctagagttgttaataaaactatcttaaaaaagttagaattacattatgattttact----------cgagttta 7760919  T
Q  356 ccgagtttgaccgagttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatc 416  Q
    | ||||||||||||||||||||||||||||||||||||||| |  ||||||| ||||||||    
T  7760918 ctgagtttgaccgagttaactcgagtcaaactcgtcaaacaatttgattttatcagaaatc 7760858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 332 - 426
Target Start/End: Original strand, 33177814 - 33177908
Alignment:
Q  332 tttactcgagtttacccgagtttaccgagtttgac-cgagttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacct 426  Q
    ||||| |||||||||  ||||||||||||||| || || |||||||| |||||||||||||||||||| | |||| |||| |||||||||| ||||    
T  33177814 tttacccgagtttacatgagtttaccgagtttaacacgtgttaactc-agtcaaactcgtcaaacatttcaatttcaccaaaaatcgagtttacct 33177908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 370 - 432
Target Start/End: Complemental strand, 19484310 - 19484249
Alignment:
Q  370 gttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctctgagt 432  Q
    ||||||||| |||||||||||||||| || |||||||||||||||||||||| ||||| ||||    
T  19484310 gttaactcg-gtcaaactcgtcaaactttccgattttaccagaaatcgagtttacctccgagt 19484249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 252 - 304
Target Start/End: Original strand, 12737690 - 12737742
Alignment:
Q  252 aaccatccaaaaaggcaagtttcacatgttcctaaagttattaataaaactat 304  Q
    ||||||||||||| |||||||||||| |||||||||||| ||||||| |||||    
T  12737690 aaccatccaaaaaagcaagtttcacaagttcctaaagttgttaataatactat 12737742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 252 - 304
Target Start/End: Original strand, 27878218 - 27878270
Alignment:
Q  252 aaccatccaaaaaggcaagtttcacatgttcctaaagttattaataaaactat 304  Q
    ||||||||||||| |||||||||||| ||||||||||||  ||||||||||||    
T  27878218 aaccatccaaaaaagcaagtttcacaagttcctaaagttgataataaaactat 27878270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 252 - 304
Target Start/End: Original strand, 27915162 - 27915214
Alignment:
Q  252 aaccatccaaaaaggcaagtttcacatgttcctaaagttattaataaaactat 304  Q
    ||||||||||||| |||||||||||| ||||||||| || |||||||||||||    
T  27915162 aaccatccaaaaaagcaagtttcacaagttcctaaaattgttaataaaactat 27915214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 252 - 304
Target Start/End: Original strand, 27961581 - 27961633
Alignment:
Q  252 aaccatccaaaaaggcaagtttcacatgttcctaaagttattaataaaactat 304  Q
    ||||||||||||| |||||||||||| ||||||||| || |||||||||||||    
T  27961581 aaccatccaaaaaagcaagtttcacaagttcctaaaattgttaataaaactat 27961633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 252 - 304
Target Start/End: Original strand, 28018399 - 28018451
Alignment:
Q  252 aaccatccaaaaaggcaagtttcacatgttcctaaagttattaataaaactat 304  Q
    ||||||||||||| |||||||||||| ||||||||||||  ||||||||||||    
T  28018399 aaccatccaaaaaagcaagtttcacaagttcctaaagttgataataaaactat 28018451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 252 - 304
Target Start/End: Complemental strand, 44977224 - 44977172
Alignment:
Q  252 aaccatccaaaaaggcaagtttcacatgttcctaaagttattaataaaactat 304  Q
    |||||| |||||| |||||||||||| |||||||||||| |||||||||||||    
T  44977224 aaccattcaaaaaagcaagtttcacaagttcctaaagttgttaataaaactat 44977172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 370 - 421
Target Start/End: Original strand, 8029846 - 8029896
Alignment:
Q  370 gttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagtt 421  Q
    ||||||||| |||||||||||||||| || ||||||||||||||||||||||    
T  8029846 gttaactcg-gtcaaactcgtcaaaccttccgattttaccagaaatcgagtt 8029896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 252 - 303
Target Start/End: Complemental strand, 41394357 - 41394306
Alignment:
Q  252 aaccatccaaaaaggcaagtttcacatgttcctaaagttattaataaaacta 303  Q
    ||||||| ||||| |||||||||||| |||||||||||| ||||||||||||    
T  41394357 aaccatctaaaaaagcaagtttcacaagttcctaaagttgttaataaaacta 41394306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 252 - 304
Target Start/End: Original strand, 8029460 - 8029511
Alignment:
Q  252 aaccatccaaaaaggcaagtttcacatgttcctaaagttattaataaaactat 304  Q
    |||||||||||||| ||||||||||| ||||||||| || |||||||||||||    
T  8029460 aaccatccaaaaag-caagtttcacaagttcctaaaattgttaataaaactat 8029511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 252 - 303
Target Start/End: Original strand, 6387508 - 6387559
Alignment:
Q  252 aaccatccaaaaaggcaagtttcacatgttcctaaagttattaataaaacta 303  Q
    ||||||||||||| |||||||||||| |||  ||||||| ||||||||||||    
T  6387508 aaccatccaaaaaagcaagtttcacaagtttataaagttgttaataaaacta 6387559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 252 - 303
Target Start/End: Original strand, 27974574 - 27974625
Alignment:
Q  252 aaccatccaaaaaggcaagtttcacatgttcctaaagttattaataaaacta 303  Q
    ||||||||||||| |||||||||||| |||||||||||| || | |||||||    
T  27974574 aaccatccaaaaaagcaagtttcacaagttcctaaagttgttgacaaaacta 27974625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 252 - 303
Target Start/End: Original strand, 28031843 - 28031894
Alignment:
Q  252 aaccatccaaaaaggcaagtttcacatgttcctaaagttattaataaaacta 303  Q
    ||||||||||||| |||||||||||| |||||||||||| || | |||||||    
T  28031843 aaccatccaaaaaagcaagtttcacaagttcctaaagttgttgacaaaacta 28031894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 432
Target Start/End: Original strand, 10294996 - 10295057
Alignment:
Q  370 gttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctctgagt 432  Q
    |||||||| |||||||||||| |||| || ||||||||||||||| |||||| ||||| ||||    
T  10294996 gttaactc-agtcaaactcgttaaaccttccgattttaccagaaaccgagtttacctcagagt 10295057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 424
Target Start/End: Original strand, 12522439 - 12522492
Alignment:
Q  370 gttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaac 424  Q
    ||||||||| |||||||||||||||| || | ||||||||||||| |||||||||    
T  12522439 gttaactcg-gtcaaactcgtcaaacctttcaattttaccagaaaccgagttaac 12522492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 386 - 432
Target Start/End: Original strand, 12522528 - 12522574
Alignment:
Q  386 ctcgtcaaacattgcgattttaccagaaatcgagttaacctctgagt 432  Q
    |||||||||| || ||||||||||||||| |||||| ||||||||||    
T  12522528 ctcgtcaaaccttccgattttaccagaaaccgagtttacctctgagt 12522574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 432
Target Start/End: Original strand, 28317077 - 28317138
Alignment:
Q  370 gttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctctgagt 432  Q
    ||||||||| |||||||||||||||| || |||||| |||| |||||||||| ||||| ||||    
T  28317077 gttaactcg-gtcaaactcgtcaaacttttcgatttcaccaaaaatcgagtttacctccgagt 28317138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 432
Target Start/End: Complemental strand, 31625852 - 31625791
Alignment:
Q  370 gttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctctgagt 432  Q
    |||||||| |||||||||||| |||| || ||||||||||||||| |||||| ||||| ||||    
T  31625852 gttaactc-agtcaaactcgttaaaccttccgattttaccagaaaccgagtttacctcagagt 31625791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 267 - 304
Target Start/End: Original strand, 27869562 - 27869599
Alignment:
Q  267 caagtttcacatgttcctaaagttattaataaaactat 304  Q
    ||||||||||| |||||||||||| |||||||||||||    
T  27869562 caagtttcacaagttcctaaagttgttaataaaactat 27869599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 304
Target Start/End: Complemental strand, 24082688 - 24082640
Alignment:
Q  256 atccaaaaaggcaagtttcacatgttcctaaagttattaataaaactat 304  Q
    ||||||||| |||||||||||| |||| ||||||| ||||| |||||||    
T  24082688 atccaaaaaagcaagtttcacaagttcgtaaagttgttaattaaactat 24082640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 215
Target Start/End: Complemental strand, 42423794 - 42423758
Alignment:
Q  179 ataataaagcattatgttcaactaaacatcaaaatac 215  Q
    |||||||| |||||||||||||| |||||||||||||    
T  42423794 ataataaaacattatgttcaacttaacatcaaaatac 42423758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 128; Significance: 5e-66; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 158 - 432
Target Start/End: Complemental strand, 25050177 - 25049905
Alignment:
Q  158 aaaggttttcaaccaccatatataataaagcattatgttcaactaaacatcaaaatacnnnnnnn-cttgcaaaatcataagtcgcttaagttttaacca 256  Q
    ||||||||||||||||||||    ||||| ||||||||||||||||||||||||||||        |||||||||||||||| | ||||||| |||||||    
T  25050177 aaaggttttcaaccaccata----ataaaacattatgttcaactaaacatcaaaatacaaaataaacttgcaaaatcataagcctcttaagtcttaacca 25050082  T
Q  257 tccaaaaaggcaagtttcacatgttcctaaagttattaataaaactatnnnnnnnnnttagacttacattccgattttactcgagtttacccgagtttac 356  Q
    |||||||| |||||||||||| ||||| |||| | |||||||||||||         ||||||||||||||||||||||||||| ||||||||| |||||    
T  25050081 tccaaaaatgcaagtttcacaagttcccaaaggtgttaataaaactataaacaaaaattagacttacattccgattttactcgattttacccgattttac 25049982  T
Q  357 c-gagtttgaccgagttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctctgagt 432  Q
    | | ||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||| ||||| ||||    
T  25049981 ctgtgtttgaccgagttaactcgagtcaaactcatcaaacattccgattttactagaaatcgagtttacctccgagt 25049905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 342 - 426
Target Start/End: Original strand, 45602393 - 45602478
Alignment:
Q  342 tttacccgagtttacc-gagtttgaccgagttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacct 426  Q
    ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||    
T  45602393 tttactcgagtttacccgagtttgaccgagttaactcgagtcaaactcgtcaaacatttcgattttaccagaaattgagtttacct 45602478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 180 - 304
Target Start/End: Original strand, 21718271 - 21718396
Alignment:
Q  180 taataaagcattatgttcaactaaacatcaaaatacnnnnnnn-cttgcaaaatcataagtcgcttaagttttaaccatccaaaaaggcaagtttcacat 278  Q
    ||||||| ||||||||||||||||| ||||||| ||        |||||||||||||||||  ||||||| ||||||||||||||||||||||||||||     
T  21718271 taataaaacattatgttcaactaaaaatcaaaaaacaaaataaacttgcaaaatcataagtatcttaagtcttaaccatccaaaaaggcaagtttcacaa 21718370  T
Q  279 gttcctaaagttattaataaaactat 304  Q
    |||| |||| || |||||||||||||    
T  21718371 gttcttaaaattgttaataaaactat 21718396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 348 - 432
Target Start/End: Complemental strand, 7665709 - 7665625
Alignment:
Q  348 cgagtttac-cgagtttgaccgagttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctctgagt 432  Q
    ||||||||| ||||||| ||||||||||||| |||||||||||||||| ||| ||||||||||| |||||||||| ||||| ||||    
T  7665709 cgagtttacacgagttt-accgagttaactctagtcaaactcgtcaaatattccgattttaccaaaaatcgagtttacctccgagt 7665625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 252 - 304
Target Start/End: Complemental strand, 33693759 - 33693707
Alignment:
Q  252 aaccatccaaaaaggcaagtttcacatgttcctaaagttattaataaaactat 304  Q
    ||||||||||||| |||||||||||| |||||||||||| |||||||||||||    
T  33693759 aaccatccaaaaaagcaagtttcacaagttcctaaagttgttaataaaactat 33693707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 338 - 432
Target Start/End: Original strand, 9818537 - 9818631
Alignment:
Q  338 cgagtttacccgagtttaccgagtttgac-cgagttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctctgagt 432  Q
    ||||||||| |||||||||||||||| || || ||| ||||| |||||||||||||||| || |||||| |||| |||||||||| ||||| ||||    
T  9818537 cgagtttacacgagtttaccgagtttaacacgtgttcactcg-gtcaaactcgtcaaactttccgatttcaccaaaaatcgagtttacctccgagt 9818631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 370 - 432
Target Start/End: Complemental strand, 8598754 - 8598693
Alignment:
Q  370 gttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctctgagt 432  Q
    ||||||||| |||||||||||||||| || |||||||||||||||||||||| ||||| ||||    
T  8598754 gttaactcg-gtcaaactcgtcaaactttccgattttaccagaaatcgagtttacctccgagt 8598693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 370 - 432
Target Start/End: Complemental strand, 49296211 - 49296150
Alignment:
Q  370 gttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctctgagt 432  Q
    ||||||||| |||||||||||||||| || |||||||||||||||||||||| ||||| ||||    
T  49296211 gttaactcg-gtcaaactcgtcaaacttttcgattttaccagaaatcgagtttacctccgagt 49296150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 252 - 304
Target Start/End: Original strand, 4962317 - 4962369
Alignment:
Q  252 aaccatccaaaaaggcaagtttcacatgttcctaaagttattaataaaactat 304  Q
    ||||||||||||| |||||||||||| |||||||||||| | |||||||||||    
T  4962317 aaccatccaaaaaagcaagtttcacaagttcctaaagttgtcaataaaactat 4962369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 380 - 428
Target Start/End: Original strand, 21386499 - 21386547
Alignment:
Q  380 gtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctct 428  Q
    |||||||||||||||| || |||||||||||||||||||||| ||||||    
T  21386499 gtcaaactcgtcaaacttttcgattttaccagaaatcgagtttacctct 21386547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 252 - 304
Target Start/End: Complemental strand, 43173396 - 43173344
Alignment:
Q  252 aaccatccaaaaaggcaagtttcacatgttcctaaagttattaataaaactat 304  Q
    ||||||||||||| |||||||||||  |||||||||||| |||||||||||||    
T  43173396 aaccatccaaaaaagcaagtttcaccagttcctaaagttgttaataaaactat 43173344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 252 - 304
Target Start/End: Complemental strand, 49458859 - 49458807
Alignment:
Q  252 aaccatccaaaaaggcaagtttcacatgttcctaaagttattaataaaactat 304  Q
    |||||||||||||  ||||||||||| |||||||||||| |||||||||||||    
T  49458859 aaccatccaaaaaatcaagtttcacaagttcctaaagttgttaataaaactat 49458807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 370 - 427
Target Start/End: Complemental strand, 33693351 - 33693295
Alignment:
Q  370 gttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctc 427  Q
    ||||||||| |||||||||||||||| ||  ||||||||||||||||||||| |||||    
T  33693351 gttaactcg-gtcaaactcgtcaaaccttctgattttaccagaaatcgagtttacctc 33693295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 380 - 421
Target Start/End: Complemental strand, 49458444 - 49458403
Alignment:
Q  380 gtcaaactcgtcaaacattgcgattttaccagaaatcgagtt 421  Q
    |||||||||||||||| || ||||||||||||||||||||||    
T  49458444 gtcaaactcgtcaaaccttccgattttaccagaaatcgagtt 49458403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 370 - 427
Target Start/End: Complemental strand, 53836057 - 53836001
Alignment:
Q  370 gttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctc 427  Q
    ||||||||| |||||||||||||||| || ||||||||||||||||| |||| |||||    
T  53836057 gttaactcg-gtcaaactcgtcaaactttccgattttaccagaaatcaagtttacctc 53836001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 370 - 430
Target Start/End: Original strand, 22489490 - 22489549
Alignment:
Q  370 gttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctctga 430  Q
    ||||||||| ||||||||||| |||| || |||||||||||||||||||||| || |||||    
T  22489490 gttaactcg-gtcaaactcgttaaaccttccgattttaccagaaatcgagtttacatctga 22489549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 338 - 421
Target Start/End: Complemental strand, 49293931 - 49293848
Alignment:
Q  338 cgagtttacccgagtttaccgagtttgac-cgagttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagtt 421  Q
    ||||||||| |||||||||||| ||| || || ||||| ||| |||||||||||||||| || |||||| |||| ||||||||||    
T  49293931 cgagtttacacgagtttaccgaatttaacacgtgttaattcg-gtcaaactcgtcaaactttccgatttcaccaaaaatcgagtt 49293848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 252 - 302
Target Start/End: Original strand, 21386095 - 21386145
Alignment:
Q  252 aaccatccaaaaaggcaagtttcacatgttcctaaagttattaataaaact 302  Q
    |||||||| |||| |||||||||||| |||| ||||||| |||||||||||    
T  21386095 aaccatccgaaaaagcaagtttcacaagttcgtaaagttgttaataaaact 21386145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 432
Target Start/End: Complemental strand, 26107871 - 26107810
Alignment:
Q  370 gttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctctgagt 432  Q
    |||||||| |||||||||||| |||| || ||||| |||||||||||||||| ||||| ||||    
T  26107871 gttaactc-agtcaaactcgttaaaccttccgattgtaccagaaatcgagtttacctcagagt 26107810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 427
Target Start/End: Original strand, 4962737 - 4962793
Alignment:
Q  370 gttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctc 427  Q
    ||||||||| |||||||||||||||| || |||||||||  ||||||||||| |||||    
T  4962737 gttaactcg-gtcaaactcgtcaaacctttcgattttacttgaaatcgagtttacctc 4962793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 432
Target Start/End: Complemental strand, 39038624 - 39038571
Alignment:
Q  379 agtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctctgagt 432  Q
    |||||||||||| |||| || ||||||||||||||| |||||| ||||| ||||    
T  39038624 agtcaaactcgttaaaccttccgattttaccagaaaccgagtttacctcagagt 39038571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 432
Target Start/End: Complemental strand, 43173010 - 43172961
Alignment:
Q  383 aaactcgtcaaacattgcgattttaccagaaatcgagttaacctctgagt 432  Q
    |||||| |||||| || |||||||||||||||||||||| ||||| ||||    
T  43173010 aaactcttcaaacctttcgattttaccagaaatcgagtttacctccgagt 43172961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 427
Target Start/End: Complemental strand, 48379692 - 48379636
Alignment:
Q  370 gttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctc 427  Q
    |||||||| |||||||||||| || | || |||||||||||||||||||||| |||||    
T  48379692 gttaactc-agtcaaactcgttaagccttccgattttaccagaaatcgagtttacctc 48379636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 432
Target Start/End: Original strand, 52617638 - 52617691
Alignment:
Q  379 agtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctctgagt 432  Q
    |||||||||||| |||| || ||||||||||||||| |||||| ||||| ||||    
T  52617638 agtcaaactcgttaaaccttccgattttaccagaaaccgagtttacctcagagt 52617691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 304
Target Start/End: Original strand, 7437156 - 7437207
Alignment:
Q  252 aaccatccaaaaaggcaagtttcacatgttcctaaagttattaataaaactat 304  Q
    |||||||||||||  ||||||| ||| |||||||||||| |||||||||||||    
T  7437156 aaccatccaaaaaa-caagtttaacaagttcctaaagttgttaataaaactat 7437207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 158 - 215
Target Start/End: Complemental strand, 7667376 - 7667323
Alignment:
Q  158 aaaggttttcaaccaccatatataataaagcattatgttcaactaaacatcaaaatac 215  Q
    ||||||||||||||||     |||||||| ||||||||| ||||||||||||||||||    
T  7667376 aaaggttttcaaccac----aataataaaacattatgttaaactaaacatcaaaatac 7667323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 118; Significance: 5e-60; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 155 - 304
Target Start/End: Complemental strand, 15926639 - 15926489
Alignment:
Q  155 tacaaaggttttcaaccaccatatataataaagcattatgttcaactaaacatcaaaatacnnnnnnn-cttgcaaaatcataagtcgcttaagttttaa 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||    
T  15926639 tacaaaggttttcaaccaccatatataataaagcattatgttcaactaaacatcaaaatacaaaataaacttgcaaaatcataagtcgcttaagttttaa 15926540  T
Q  254 ccatccaaaaaggcaagtttcacatgttcctaaagttattaataaaactat 304  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  15926539 ccatccaaaaaggcaagtttcacatgttcctaaagttgttaataaaactat 15926489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 15926793 - 15926699
Alignment:
Q  1 cagatatggacactacaagttattggttatgctcaaggttttttacggatggagagtttacctcaaatcgactcgagaactcgtacgagtttacc 95  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15926793 cagatatggacactacaagttattggttatgctcaaggttttttacggatggagagtttacctcaaatcgactcgagaactcgtacgagtttacc 15926699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 223 - 426
Target Start/End: Original strand, 3858278 - 3858483
Alignment:
Q  223 cttgcaaaatcataagtcgcttaagttttaaccatccaaaaaggcaagtttcacatgttcctaaagttattaataaaactatnnnnnnnnnt-tagactt 321  Q
    |||||||||||||||||| ||| ||| |||||||||||||||||||||||||||| ||||||| |||| |||||||||||||           |||||||    
T  3858278 cttgcaaaatcataagtctcttgagtcttaaccatccaaaaaggcaagtttcacaagttcctatagttgttaataaaactatccaaaaaaaagtagactt 3858377  T
Q  322 acattccgattttactcgagtttacccgagtttacc-gagtttgaccgagttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagt 420  Q
    |||||  || ||||||| | ||||||||| |||||| || ||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||    
T  3858378 acattttgagtttactcaaatttacccgattttacccgaatttgaccgagttaactcgagttaaactcgtcaaacattccgattttaccaaaaatcgagt 3858477  T
Q  421 taacct 426  Q
    | ||||    
T  3858478 ttacct 3858483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 361 - 432
Target Start/End: Complemental strand, 15926483 - 15926412
Alignment:
Q  361 tttgaccgagttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctctgagt 432  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  15926483 tttgaccgagttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctccgagt 15926412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 179 - 301
Target Start/End: Complemental strand, 43618034 - 43617911
Alignment:
Q  179 ataataaagcattatgttcaactaaacatcaaaatacnnnnnnn-cttgcaaaatcataagtcgcttaagttttaaccatccaaaaaggcaagtttcaca 277  Q
    ||||||||||||| |||||||||||||||||||||||        |||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||    
T  43618034 ataataaagcattttgttcaactaaacatcaaaatacaaaataaacttgcaaagtcataagtctcttaagtcttaaccatccaaaaaggcaagtttcaca 43617935  T
Q  278 tgttcctaaagttattaataaaac 301  Q
     ||| |||||||| ||||||||||    
T  43617934 agtttctaaagttgttaataaaac 43617911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 232 - 304
Target Start/End: Complemental strand, 32294368 - 32294296
Alignment:
Q  232 tcataagtcgcttaagttttaaccatccaaaaaggcaagtttcacatgttcctaaagttattaataaaactat 304  Q
    ||||||| | ||||||| ||||||||||||||| |||||||||||| |||||||||||| |||||||||||||    
T  32294368 tcataagactcttaagtcttaaccatccaaaaaagcaagtttcacaagttcctaaagttgttaataaaactat 32294296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 326 - 424
Target Start/End: Original strand, 43318722 - 43318820
Alignment:
Q  326 tccgattttactcgagtttacccgagtttaccgagtttgac-cgagttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaac 424  Q
    ||||||||||| ||||||||| |||||||||||||||| || |  ||||||||| |||||||||||||||| || ||||||||||| |||| ||||||||    
T  43318722 tccgattttacccgagtttacacgagtttaccgagtttaacacatgttaactcg-gtcaaactcgtcaaactttccgattttaccaaaaatagagttaac 43318820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 332 - 427
Target Start/End: Original strand, 1833673 - 1833768
Alignment:
Q  332 tttactcgagtttacccgagtttaccgagtttgaccgagttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctc 427  Q
    ||||| ||| |||||| ||||||| |||||||||| || |||||||||||||||||||  |||||||   ||||||||||||||||| || |||||    
T  1833673 tttacccgattttacctgagtttatcgagtttgactgaattaactcgagtcaaactcgataaacattcttattttaccagaaatcgaatttacctc 1833768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 339 - 432
Target Start/End: Complemental strand, 13898603 - 13898510
Alignment:
Q  339 gagtttacccgagtttaccgagtttgac-cgagttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctctgagt 432  Q
    |||||||| |||||||||||||||| || || ||||||||| |||||||||||||||| || |||||| |||| |||||||||| ||||| ||||    
T  13898603 gagtttacacgagtttaccgagtttaacacgtgttaactcg-gtcaaactcgtcaaactttccgatttcaccaaaaatcgagtttacctccgagt 13898510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 339 - 432
Target Start/End: Complemental strand, 14039220 - 14039127
Alignment:
Q  339 gagtttacccgagtttaccgagtttgac-cgagttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctctgagt 432  Q
    |||||||| |||||||||||||||| || || ||||||||| |||||||||||||||| || |||||| |||| |||||||||| ||||| ||||    
T  14039220 gagtttacacgagtttaccgagtttaacacgtgttaactcg-gtcaaactcgtcaaactttccgatttcaccaaaaatcgagtttacctccgagt 14039127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 367 - 421
Target Start/End: Complemental strand, 32294011 - 32293957
Alignment:
Q  367 cgagttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagtt 421  Q
    |||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||    
T  32294011 cgagttaactcgagtcaaactcgtcaaacattccgattttacaagaaatccagtt 32293957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 367 - 432
Target Start/End: Original strand, 32242208 - 32242273
Alignment:
Q  367 cgagttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctctgagt 432  Q
    |||||||||||||||||||||||| |||||||  |||||||| ||||||| |||| ||||| ||||    
T  32242208 cgagttaactcgagtcaaactcgttaaacattctgattttacaagaaatcaagtttacctcagagt 32242273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 380 - 432
Target Start/End: Complemental strand, 15224316 - 15224264
Alignment:
Q  380 gtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctctgagt 432  Q
    |||||||||||||||| || |||||| ||||||||||||||| ||||||||||    
T  15224316 gtcaaactcgtcaaacttttcgatttcaccagaaatcgagtttacctctgagt 15224264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 337 - 432
Target Start/End: Complemental strand, 19948667 - 19948572
Alignment:
Q  337 tcgagtttacccgagtttaccgagtttgac-cgagttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctctgagt 432  Q
    |||||||||| |||||||||||||||| || || ||||||||| |||||||||||||||| || |||||| |||| |||  ||||| ||||| ||||    
T  19948667 tcgagtttacacgagtttaccgagtttaacacgtgttaactcg-gtcaaactcgtcaaactttccgatttcaccaaaaactgagtttacctccgagt 19948572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 338 - 432
Target Start/End: Complemental strand, 3991901 - 3991807
Alignment:
Q  338 cgagtttacccgagtttaccgagtttgac-cgagttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctctgagt 432  Q
    ||||||||| | |||||||||||||| || || ||||||||| |||||||||||||||| || |||||| |||| ||| |||||| ||||| ||||    
T  3991901 cgagtttacacaagtttaccgagtttaacacgtgttaactcg-gtcaaactcgtcaaacttttcgatttcaccaaaaaccgagtttacctccgagt 3991807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 338 - 432
Target Start/End: Original strand, 38413427 - 38413521
Alignment:
Q  338 cgagtttacccgagtttaccgagtttgac-cgagttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctctgagt 432  Q
    ||||||||| |||||||| ||||||| || || ||||||||| |||||||||||||||| || |||||| |||| ||| |||||| ||||| ||||    
T  38413427 cgagtttacacgagtttatcgagtttaacacgtgttaactcg-gtcaaactcgtcaaactttccgatttcaccaaaaaccgagtttacctccgagt 38413521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 370 - 432
Target Start/End: Original strand, 18899934 - 18899995
Alignment:
Q  370 gttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctctgagt 432  Q
    ||||||||| |||||||||||||||| || ||||||||| |||||||||||| ||||| ||||    
T  18899934 gttaactcg-gtcaaactcgtcaaactttccgattttactagaaatcgagtttacctccgagt 18899995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 158 - 215
Target Start/End: Original strand, 3858036 - 3858089
Alignment:
Q  158 aaaggttttcaaccaccatatataataaagcattatgttcaactaaacatcaaaatac 215  Q
    ||||||||||||||||||||    ||||| |||||| |||||||||||||||||||||    
T  3858036 aaaggttttcaaccaccata----ataaaacattattttcaactaaacatcaaaatac 3858089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 252 - 304
Target Start/End: Original strand, 18727249 - 18727301
Alignment:
Q  252 aaccatccaaaaaggcaagtttcacatgttcctaaagttattaataaaactat 304  Q
    ||||||||||||| ||||| |||||| |||| ||||||| |||||||||||||    
T  18727249 aaccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaaactat 18727301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 232 - 304
Target Start/End: Original strand, 32294424 - 32294495
Alignment:
Q  232 tcataagtcgcttaagttttaaccatccaaaaaggcaagtttcacatgttcctaaagttattaataaaactat 304  Q
    ||||||| | ||||||| ||||||||| |||||  ||||||||||| ||||||||| || |||||||||||||    
T  32294424 tcataagactcttaagtcttaaccatcaaaaaaatcaagtttcacaagttcctaaa-ttgttaataaaactat 32294495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 432
Target Start/End: Original strand, 11153356 - 11153417
Alignment:
Q  370 gttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctctgagt 432  Q
    ||||||||| |||||||||| |||||||  ||||||||||||||| |||||| ||||| ||||    
T  11153356 gttaactcg-gtcaaactcgccaaacatctcgattttaccagaaaccgagtttacctccgagt 11153417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 301
Target Start/End: Complemental strand, 40830123 - 40830077
Alignment:
Q  255 catccaaaaaggcaagtttcacatgttcctaaagttattaataaaac 301  Q
    |||||||||| |||||||||||| ||||||| |||| ||||||||||    
T  40830123 catccaaaaaagcaagtttcacaagttcctatagttgttaataaaac 40830077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 427
Target Start/End: Complemental strand, 41978965 - 41978876
Alignment:
Q  338 cgagtttacccgagtttaccgagtttgac-cgagttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctc 427  Q
    ||||||||| ||||||||| |||||| || || ||||||||| |||||||||||||||| || |||||| | || ||| |||||| |||||    
T  41978965 cgagtttacacgagtttactgagtttaacacgtgttaactcg-gtcaaactcgtcaaactttccgatttcatcaaaaaccgagtttacctc 41978876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 426
Target Start/End: Complemental strand, 33262981 - 33262893
Alignment:
Q  338 cgagtttacccgagtttaccgagtttgac-cgagttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacct 426  Q
    ||||||||| || |||||||||||||  | || |||||||| ||||||||||||||||| || |||||| |||| ||| |||||| ||||    
T  33262981 cgagtttacacgcgtttaccgagtttaccacgtgttaactc-agtcaaactcgtcaaactttccgatttcaccaaaaaccgagtttacct 33262893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 304
Target Start/End: Original strand, 38295321 - 38295382
Alignment:
Q  243 ttaagttttaaccatccaaaaaggcaagtttcacatgttcctaaagttattaataaaactat 304  Q
    |||||||| | ||||||||||| | ||||||||||  |||||||||||  ||||||||||||    
T  38295321 ttaagtttaagccatccaaaaaagaaagtttcacaaattcctaaagttgctaataaaactat 38295382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 322 - 350
Target Start/End: Original strand, 1833653 - 1833681
Alignment:
Q  322 acattccgattttactcgagtttacccga 350  Q
    |||||||||||||||||||||||||||||    
T  1833653 acattccgattttactcgagtttacccga 1833681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 304
Target Start/End: Original strand, 31846774 - 31846826
Alignment:
Q  252 aaccatccaaaaaggcaagtttcacatgttcctaaagttattaataaaactat 304  Q
    ||||||| ||||| ||||||||  || |||||||||||| |||||||||||||    
T  31846774 aaccatctaaaaaagcaagttttgcaagttcctaaagttgttaataaaactat 31846826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 101; Significance: 7e-50; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 162 - 421
Target Start/End: Complemental strand, 24454173 - 24453925
Alignment:
Q  162 gttttcaaccaccatatataataaagcattatgttcaactaaacatcaaaatac-nnnnnnncttgcaaaatcataagtcgcttaagttttaaccatcca 260  Q
    |||||||||||||    ||||||||||||||||||||| |||||||||||||||        |||| ||||||||||||| ||||||| |||||||||||    
T  24454173 gttttcaaccacc----ataataaagcattatgttcaattaaacatcaaaatacaaaataaacttgtaaaatcataagtctcttaagtcttaaccatcca 24454078  T
Q  261 aaaaggcaagtttcacatgttcctaaagttattaataaaactat-nnnnnnnnnttagacttacattccgattttactcgagtttacccgagtttaccga 359  Q
    ||||||||||||||||| |||||||| ||| |||||||||||||          |||||||||||||||||||||||||||||||| || |||||||       
T  24454077 aaaaggcaagtttcacacgttcctaacgttgttaataaaactatataaaaaattttagacttacattccgattttactcgagtttaaccaagtttac--- 24453981  T
Q  360 gtttgaccgagttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagtt 421  Q
          ||||||||||||||||||||||||||||||||| | |||||||| |||||||||||    
T  24453980 ------ccgagttaactcgagtcaaactcgtcaaacattccaattttaccggaaatcgagtt 24453925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 158 - 432
Target Start/End: Complemental strand, 872105 - 871843
Alignment:
Q  158 aaaggttttcaaccaccatatataataaagcattatgttcaactaaacatcaaaatacnnnnnnn-cttgcaaaatcataagtcgcttaagttttaacca 256  Q
    ||||||||||||||||||||    ||||| ||||||||||||||||||||||||||||        |||||||||||||||||  || |||| |||||||    
T  872105 aaaggttttcaaccaccata----ataaaacattatgttcaactaaacatcaaaatacaaaataaacttgcaaaatcataagtttctaaagtcttaacca 872010  T
Q  257 tccaaaaaggcaagtttcacatgttcctaaagttattaataaaactatnnnnnnnnnttag-acttacattccgattttactcgagtttacccgagttta 355  Q
    ||||||||||||| ||||||| ||||||||| || |||||||||||||           |  ||||||||||| ||||||||||||||||||  |         
T  872009 tccaaaaaggcaaatttcacaagttcctaaatttgttaataaaactatccaaaaaaaaaaatacttacattccaattttactcgagtttaccaaa----- 871915  T
Q  356 ccgagtttgaccgagttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctctgagt 432  Q
         |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||    
T  871914 -----tttgaccgagttaactcgagtcaaactcgtcaaacattccgattttaccagaaatcgagtttacctccgagt 871843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 337 - 427
Target Start/End: Complemental strand, 55165654 - 55165564
Alignment:
Q  337 tcgagtttacccgagtttaccgagtttgaccgagttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctc 427  Q
    |||||||||| ||||||||  |||||||| ||||||||||||||||||||||||||||||||  |||||||||| ||||| |||| |||||    
T  55165654 tcgagtttacacgagtttattgagtttgatcgagttaactcgagtcaaactcgtcaaacattctgattttaccataaatcaagtttacctc 55165564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 252 - 304
Target Start/End: Original strand, 26490883 - 26490935
Alignment:
Q  252 aaccatccaaaaaggcaagtttcacatgttcctaaagttattaataaaactat 304  Q
    ||||||||||||| |||||||||||| |||||||||||| |||||||||||||    
T  26490883 aaccatccaaaaaagcaagtttcacaagttcctaaagttgttaataaaactat 26490935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 370 - 432
Target Start/End: Complemental strand, 29469258 - 29469197
Alignment:
Q  370 gttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctctgagt 432  Q
    ||||||||| |||||||||||||||| || |||||||||||||||||||||| ||||| ||||    
T  29469258 gttaactcg-gtcaaactcgtcaaactttccgattttaccagaaatcgagtttacctccgagt 29469197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 370 - 432
Target Start/End: Original strand, 42937419 - 42937480
Alignment:
Q  370 gttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctctgagt 432  Q
    ||||||||| |||||||||||||||| || |||||||||||||||||||||| ||||| ||||    
T  42937419 gttaactcg-gtcaaactcgtcaaacttttcgattttaccagaaatcgagtttacctccgagt 42937480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 252 - 304
Target Start/End: Original strand, 24966099 - 24966151
Alignment:
Q  252 aaccatccaaaaaggcaagtttcacatgttcctaaagttattaataaaactat 304  Q
    |||||||||||||  ||||||||||| |||||||||||| |||||||||||||    
T  24966099 aaccatccaaaaaaacaagtttcacaagttcctaaagttgttaataaaactat 24966151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 252 - 304
Target Start/End: Complemental strand, 33139289 - 33139237
Alignment:
Q  252 aaccatccaaaaaggcaagtttcacatgttcctaaagttattaataaaactat 304  Q
    ||||||||||||  |||||||||||| |||||||||||| |||||||||||||    
T  33139289 aaccatccaaaatagcaagtttcacaagttcctaaagttgttaataaaactat 33139237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 338 - 432
Target Start/End: Complemental strand, 54561347 - 54561253
Alignment:
Q  338 cgagtttacccgagtttaccgagtttgac-cgagttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctctgagt 432  Q
    ||||||||| |||||||||||||||| || || ||||||||| ||||||| |||||||| || |||||| |||| ||| |||||| ||||| ||||    
T  54561347 cgagtttacacgagtttaccgagtttaacacgtgttaactcg-gtcaaacacgtcaaactttccgatttcaccaaaaaccgagtttacctccgagt 54561253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 370 - 432
Target Start/End: Complemental strand, 8084304 - 8084243
Alignment:
Q  370 gttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctctgagt 432  Q
    ||||||||| |||||||||||||||| || ||||||||| |||||||||||| ||||| ||||    
T  8084304 gttaactcg-gtcaaactcgtcaaactttccgattttactagaaatcgagtttacctccgagt 8084243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 370 - 432
Target Start/End: Complemental strand, 41725657 - 41725596
Alignment:
Q  370 gttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctctgagt 432  Q
    |||||||| |||||||||||| |||| || |||||||||||||||||||||| ||||| ||||    
T  41725657 gttaactc-agtcaaactcgttaaaccttccgattttaccagaaatcgagtttacctcagagt 41725596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 255 - 304
Target Start/End: Original strand, 46862555 - 46862604
Alignment:
Q  255 catccaaaaaggcaagtttcacatgttcctaaagttattaataaaactat 304  Q
    |||||||||| |||||||||||| |||| ||||||| |||||||||||||    
T  46862555 catccaaaaaagcaagtttcacaagttcttaaagttgttaataaaactat 46862604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 370 - 427
Target Start/End: Complemental strand, 50517288 - 50517232
Alignment:
Q  370 gttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctc 427  Q
    ||||||||| |||||||||||||||| || | |||||||||||||||||||| |||||    
T  50517288 gttaactcg-gtcaaactcgtcaaaccttccaattttaccagaaatcgagtttacctc 50517232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 340 - 432
Target Start/End: Complemental strand, 51967403 - 51967311
Alignment:
Q  340 agtttacccgagtttaccgagtttgac-cgagttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctctgagt 432  Q
    ||||||| |||||||||||| ||| || || ||||||||| |||||||||||||||| || |||||| |||| ||| |||||| ||||| ||||    
T  51967403 agtttacacgagtttaccgaatttaacacgtgttaactcg-gtcaaactcgtcaaacttttcgatttcaccaaaaaccgagtttacctccgagt 51967311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 158 - 215
Target Start/End: Original strand, 17503384 - 17503437
Alignment:
Q  158 aaaggttttcaaccaccatatataataaagcattatgttcaactaaacatcaaaatac 215  Q
    ||||||||||||||||||||    |||||| ||||||||||||||| |||||||||||    
T  17503384 aaaggttttcaaccaccata----ataaagtattatgttcaactaagcatcaaaatac 17503437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 227 - 299
Target Start/End: Complemental strand, 50517632 - 50517561
Alignment:
Q  227 caaaatcataagtcgcttaagttttaaccatccaaaaaggcaagtttcacatgttcctaaagttattaataaa 299  Q
    |||||||||||||  || |||||| | ||||||||||| |||| ||||||| |||||||||||| ||||||||    
T  50517632 caaaatcataagtttct-aagtttaagccatccaaaaaagcaaatttcacaagttcctaaagttgttaataaa 50517561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 432
Target Start/End: Original strand, 23671392 - 23671443
Alignment:
Q  381 tcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctctgagt 432  Q
    ||||||||||||||| || |||||| ||||||||||||||| ||||| ||||    
T  23671392 tcaaactcgtcaaacttttcgatttcaccagaaatcgagtttacctccgagt 23671443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 432
Target Start/End: Complemental strand, 29856060 - 29855999
Alignment:
Q  370 gttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctctgagt 432  Q
    |||||||| |||||||||||| |||| || | |||||||||||||||||||| ||||| ||||    
T  29856060 gttaactc-agtcaaactcgttaaaccttccaattttaccagaaatcgagtttacctcagagt 29855999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 424
Target Start/End: Complemental strand, 37916333 - 37916280
Alignment:
Q  370 gttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaac 424  Q
    |||||||| |||||||||||| |||| || ||||||||||||||| |||||||||    
T  37916333 gttaactc-agtcaaactcgttaaaccttccgattttaccagaaaccgagttaac 37916280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 427
Target Start/End: Original strand, 26491131 - 26491187
Alignment:
Q  370 gttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctc 427  Q
    ||||||||| |||||||||||||||| ||  |||||||||||||| |||||| |||||    
T  26491131 gttaactcg-gtcaaactcgtcaaaccttctgattttaccagaaaccgagtttacctc 26491187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 432
Target Start/End: Original strand, 49834499 - 49834552
Alignment:
Q  379 agtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctctgagt 432  Q
    |||||||||||| |||| || ||||||||||||||| |||||| ||||| ||||    
T  49834499 agtcaaactcgttaaaccttccgattttaccagaaaccgagtttacctcagagt 49834552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 380 - 432
Target Start/End: Original strand, 6487335 - 6487387
Alignment:
Q  380 gtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctctgagt 432  Q
    |||||||||||||||| || |||||| |||| |||||||||| ||||| ||||    
T  6487335 gtcaaactcgtcaaactttccgatttcaccaaaaatcgagtttacctccgagt 6487387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 432
Target Start/End: Complemental strand, 26448748 - 26448665
Alignment:
Q  349 gagtttaccgagtttgac-cgagttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctctgagt 432  Q
    ||||||||||||||| || || ||||||||| |||||||||||||||| || |||||| |||| ||||  |||| ||||| ||||    
T  26448748 gagtttaccgagtttaacgcgtgttaactcg-gtcaaactcgtcaaactttccgatttcaccaaaaattaagtttacctccgagt 26448665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 426
Target Start/End: Complemental strand, 46286804 - 46286749
Alignment:
Q  370 gttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacct 426  Q
    ||||||||| |||||||||||||||| || ||| ||||| |||||||||||| ||||    
T  46286804 gttaactcg-gtcaaactcgtcaaaccttccgagtttactagaaatcgagtttacct 46286749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 380 - 432
Target Start/End: Original strand, 49501199 - 49501251
Alignment:
Q  380 gtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctctgagt 432  Q
    ||||||||||| |||| || ||||||||||||||| |||||| ||||| ||||    
T  49501199 gtcaaactcgttaaaccttccgattttaccagaaaccgagtttacctcagagt 49501251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 380 - 432
Target Start/End: Original strand, 49507264 - 49507316
Alignment:
Q  380 gtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctctgagt 432  Q
    ||||||||||| |||| || ||||||||||||||| |||||| ||||| ||||    
T  49507264 gtcaaactcgttaaaccttccgattttaccagaaaccgagtttacctcagagt 49507316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 86; Significance: 6e-41; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 158 - 386
Target Start/End: Complemental strand, 21490199 - 21489971
Alignment:
Q  158 aaaggttttcaaccaccatatataataaagcattatgttcaactaaacatcaaaatac--nnnnnnncttgcaaaatcataagtcgcttaagttttaacc 255  Q
    ||||||||||||| |||    ||||||||  |||||||||||||||||||||||||||         |||||||||||||||||| ||||||| ||||||    
T  21490199 aaaggttttcaactacc----ataataaaatattatgttcaactaaacatcaaaatacaaaaaaaaacttgcaaaatcataagtctcttaagtcttaacc 21490104  T
Q  256 atccaaaaaggcaagtttcacatgttcctaaagttattaataaaactat--nnnnnnnnnttagacttacattccgattttactcgagtttacccgagtt 353  Q
    |||||||||||||||||||||| |||| ||||||| |||||||||||||            ||||||||||||  |||||||||  ||||||||||||||    
T  21490103 atccaaaaaggcaagtttcacaagttcttaaagttgttaataaaactattaaaaaaaaaactagacttacattttgattttacttaagtttacccgagtt 21490004  T
Q  354 taccgagtttgaccgagttaactcgagtcaaac 386  Q
    |||||||||||||| |||| |||||||||||||    
T  21490003 taccgagtttgacctagttcactcgagtcaaac 21489971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 359 - 432
Target Start/End: Original strand, 16548839 - 16548912
Alignment:
Q  359 agtttgaccgagttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctctgagt 432  Q
    ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||| ||||| ||||    
T  16548839 agtttgaccgagttaactcgagtcaaattcgtcaaacatttcgattttaccagaaattgagtttacctccgagt 16548912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 365 - 416
Target Start/End: Complemental strand, 29758806 - 29758756
Alignment:
Q  365 accgagttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatc 416  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  29758806 accgagttaactcgagtcaaactcgtcaaacattccga-tttaccagaaatc 29758756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 370 - 432
Target Start/End: Original strand, 7125171 - 7125232
Alignment:
Q  370 gttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctctgagt 432  Q
    ||||||||| |||||||||||||||| || |||||||||||||||||||||| ||||| ||||    
T  7125171 gttaactcg-gtcaaactcgtcaaactttccgattttaccagaaatcgagtttacctccgagt 7125232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 158 - 277
Target Start/End: Original strand, 16548703 - 16548818
Alignment:
Q  158 aaaggttttcaaccaccatatataataaagcattatgttcaactaaacatcaaaatac-nnnnnnncttgcaaaatcataagtcgcttaagttttaacca 256  Q
    |||||||||||||||||| |    |||||||||||| |||||||||||||||||||||        |||||||||||||||||| | ||||| | |||||    
T  16548703 aaaggttttcaaccaccaaa----ataaagcattatattcaactaaacatcaaaatacaaaataaacttgcaaaatcataagtctcgtaagtctaaacca 16548798  T
Q  257 tccaaaaaggcaagtttcaca 277  Q
    ||| |||||||||| ||||||    
T  16548799 tcc-aaaaggcaagcttcaca 16548818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 370 - 421
Target Start/End: Original strand, 28623173 - 28623223
Alignment:
Q  370 gttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagtt 421  Q
    ||||||||| |||||||||||||||| |||| ||||||||||||||||||||    
T  28623173 gttaactcg-gtcaaactcgtcaaactttgcaattttaccagaaatcgagtt 28623223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 223 - 304
Target Start/End: Original strand, 16497489 - 16497571
Alignment:
Q  223 cttgcaaaatcataagtcgcttaagttt-taaccatccaaaaaggcaagtttcacatgttcctaaagttattaataaaactat 304  Q
    |||||||||||||||||  | ||||  | |||||||||||||| |||||||||||| ||| |||||||| |||||||| ||||    
T  16497489 cttgcaaaatcataagtttcataagactctaaccatccaaaaaagcaagtttcacaagttgctaaagttgttaataaacctat 16497571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 370 - 432
Target Start/End: Original strand, 37798126 - 37798187
Alignment:
Q  370 gttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctctgagt 432  Q
    ||||||||| |||||||||||||||| || |||||||||||||||| ||||| |||| |||||    
T  37798126 gttaactcg-gtcaaactcgtcaaacttttcgattttaccagaaattgagtttacctttgagt 37798187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 252 - 304
Target Start/End: Original strand, 29716508 - 29716560
Alignment:
Q  252 aaccatccaaaaaggcaagtttcacatgttcctaaagttattaataaaactat 304  Q
    |||||| |||||| ||||||| |||| |||||||||||| |||||||||||||    
T  29716508 aaccattcaaaaaagcaagttacacaagttcctaaagtttttaataaaactat 29716560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 158 - 215
Target Start/End: Complemental strand, 29759226 - 29759173
Alignment:
Q  158 aaaggttttcaaccaccatatataataaagcattatgttcaactaaacatcaaaatac 215  Q
    ||||||||||||||||     |||||||| ||||||||||||||||||||||||||||    
T  29759226 aaaggttttcaaccac----aataataaaacattatgttcaactaaacatcaaaatac 29759173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 432
Target Start/End: Original strand, 1460804 - 1460865
Alignment:
Q  370 gttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctctgagt 432  Q
    |||||||| |||||||||||| || | || ||||||||||||||| |||||| ||||||||||    
T  1460804 gttaactc-agtcaaactcgttaagccttccgattttaccagaaaccgagtttacctctgagt 1460865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 432
Target Start/End: Original strand, 2675080 - 2675141
Alignment:
Q  370 gttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctctgagt 432  Q
    ||||||||| |||||||||||||||| || |||||| |||| |||||||||| ||||| ||||    
T  2675080 gttaactcg-gtcaaactcgtcaaacttttcgatttcaccaaaaatcgagtttacctccgagt 2675141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 432
Target Start/End: Original strand, 5651193 - 5651254
Alignment:
Q  370 gttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctctgagt 432  Q
    ||||||||| |||||||||||||||| || | |||| ||||||||||||||| ||||| ||||    
T  5651193 gttaactcg-gtcaaactcgtcaaacttttcaatttcaccagaaatcgagtttacctccgagt 5651254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 432
Target Start/End: Original strand, 21238765 - 21238826
Alignment:
Q  370 gttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctctgagt 432  Q
    ||||||||| |||||||||||||||| || ||||||||||| ||| |||||| ||||| ||||    
T  21238765 gttaactcg-gtcaaactcgtcaaactttccgattttaccaaaaaccgagtttacctccgagt 21238826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 432
Target Start/End: Original strand, 33892813 - 33892909
Alignment:
Q  338 cgagtttac-ccgagtttac-cgagtttgac-cgagttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctctgagt 432  Q
    ||||||||| |||||||||| ||||||| || || ||||||||| |||||||||||||||| || |||||| | || |||||||||| ||||| ||||    
T  33892813 cgagtttactccgagtttacacgagtttaacacgtgttaactcg-gtcaaactcgtcaaactttccgatttcatcaaaaatcgagtttacctccgagt 33892909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 85; Significance: 2e-40; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 189 - 432
Target Start/End: Original strand, 33496924 - 33497159
Alignment:
Q  189 attatgttcaactaaacatcaaaatacnnnnnnnc-ttgcaaaatcataagtcgcttaagttttaaccatccaaaaaggcaagtttcacatgttcctaaa 287  Q
    |||||||||||||||||||||||||||         ||||||| ||||||||| ||| ||| |||||||||||||| ||||||||||||| |||||||||    
T  33496924 attatgttcaactaaacatcaaaatacaaaataaagttgcaaagtcataagtctcttgagtcttaaccatccaaaatggcaagtttcacaagttcctaaa 33497023  T
Q  288 gttattaataaaactatnnnnnnnnnttagacttacattccgattttactcgagtttacccgagtttaccgagtttgaccgagttaactcgagtcaaact 387  Q
    ||| |||||||||||||         |||||||||||||||||||||||||||||||||         | || |||||  |||||||||| |||||||||    
T  33497024 gttgttaataaaactataaaaatagtttagacttacattccgattttactcgagtttac---------ctgattttgattgagttaactcaagtcaaact 33497114  T
Q  388 cgtcaaacattgcgattttaccagaaatcgagttaacctctgagt 432  Q
    ||||||||||| | |||||| ||||||||||||| ||||| ||||    
T  33497115 cgtcaaacattccaattttatcagaaatcgagtttacctccgagt 33497159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 223 - 432
Target Start/End: Original strand, 26201654 - 26201856
Alignment:
Q  223 cttgcaaaatcataagtcgcttaagttttaaccatccaaaaaggcaagtttcacatgttcctaaagttattaataaaactatnnnnnnnnntt-agactt 321  Q
    |||||||||| ||||||| ||||| | |||| |||| |||||||| ||||||||| ||||||||| || |||||||||||||         || ||||||    
T  26201654 cttgcaaaattataagtctcttaaatcttaaacatctaaaaaggctagtttcacaagttcctaaaattgttaataaaactatccaaaataatttagactt 26201753  T
Q  322 acattccgattttactcgagtttacccgagtttacc-gagtttgaccgagttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagt 420  Q
    |||||| |||||||||||||         ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||  ||| ||||    
T  26201754 acattctgattttactcgag---------gtttacccgagtttgaccgagttaactcgagtcaaactcgtcaaacattccgattttagcaataattgagt 26201844  T
Q  421 taacctctgagt 432  Q
    | ||||| ||||    
T  26201845 ttacctccgagt 26201856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 364 - 432
Target Start/End: Original strand, 11735188 - 11735256
Alignment:
Q  364 gaccgagttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctctgagt 432  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||| ||||    
T  11735188 gaccgagttaactcgagtcaaactcggcaaacattccgattttaccagaaatcgagtttacctccgagt 11735256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 348 - 407
Target Start/End: Complemental strand, 27148963 - 27148904
Alignment:
Q  348 cgagtttaccgagtttgaccgagttaactcgagtcaaactcgtcaaacattgcgatttta 407  Q
    ||||||||| |||||||||||||||||||| ||||||||||||||||||||  |||||||    
T  27148963 cgagtttacagagtttgaccgagttaactcaagtcaaactcgtcaaacattctgatttta 27148904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 252 - 304
Target Start/End: Complemental strand, 31445838 - 31445786
Alignment:
Q  252 aaccatccaaaaaggcaagtttcacatgttcctaaagttattaataaaactat 304  Q
    ||||||||||||| |||||||||||| |||||||||||| |||||||||||||    
T  31445838 aaccatccaaaaatgcaagtttcacaagttcctaaagttgttaataaaactat 31445786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 252 - 301
Target Start/End: Complemental strand, 42611005 - 42610956
Alignment:
Q  252 aaccatccaaaaaggcaagtttcacatgttcctaaagttattaataaaac 301  Q
    ||||||||||||| |||||||||||| |||||||||||| ||||||||||    
T  42611005 aaccatccaaaaaagcaagtttcacaagttcctaaagttgttaataaaac 42610956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 252 - 304
Target Start/End: Complemental strand, 16710031 - 16709979
Alignment:
Q  252 aaccatccaaaaaggcaagtttcacatgttcctaaagttattaataaaactat 304  Q
    ||||||||||||| |||||||||||| |||||||||||| ||||||| |||||    
T  16710031 aaccatccaaaaaagcaagtttcacaagttcctaaagttgttaataagactat 16709979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 252 - 304
Target Start/End: Complemental strand, 17684267 - 17684215
Alignment:
Q  252 aaccatccaaaaaggcaagtttcacatgttcctaaagttattaataaaactat 304  Q
    ||||||||||||| |||||||||||| |||||||||||| ||||||| |||||    
T  17684267 aaccatccaaaaaagcaagtttcacaagttcctaaagttgttaataagactat 17684215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 256 - 304
Target Start/End: Complemental strand, 21486626 - 21486578
Alignment:
Q  256 atccaaaaaggcaagtttcacatgttcctaaagttattaataaaactat 304  Q
    ||||||||| |||||||||||| |||||||||||| |||||||||||||    
T  21486626 atccaaaaaagcaagtttcacaagttcctaaagttgttaataaaactat 21486578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 252 - 304
Target Start/End: Complemental strand, 23017477 - 23017425
Alignment:
Q  252 aaccatccaaaaaggcaagtttcacatgttcctaaagttattaataaaactat 304  Q
    ||||||||||||| |||||||||||| ||| |||||||| |||||||||||||    
T  23017477 aaccatccaaaaaagcaagtttcacaagtttctaaagttgttaataaaactat 23017425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 252 - 304
Target Start/End: Complemental strand, 43172559 - 43172507
Alignment:
Q  252 aaccatccaaaaaggcaagtttcacatgttcctaaagttattaataaaactat 304  Q
    ||||||||||||| |||||||||||| |||| ||||||| |||||||||||||    
T  43172559 aaccatccaaaaaagcaagtttcacaagttcgtaaagttgttaataaaactat 43172507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 326 - 432
Target Start/End: Original strand, 14732255 - 14732361
Alignment:
Q  326 tccgattttactcgagtttacccgagtttaccgagtttgac-cgagttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaac 424  Q
    ||||| ||||| ||||||||| |||||||||||||||| || || ||| ||||| |||||||||||||||| || |||||| |||| ||| | |||| ||    
T  14732255 tccgagtttacacgagtttacacgagtttaccgagtttaacacgtgttcactcg-gtcaaactcgtcaaactttccgatttcaccaaaaaccaagtttac 14732353  T
Q  425 ctctgagt 432  Q
    ||| ||||    
T  14732354 ctccgagt 14732361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 370 - 432
Target Start/End: Complemental strand, 14741521 - 14741460
Alignment:
Q  370 gttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctctgagt 432  Q
    ||||||||| |||||||||||||||| || ||||||||| |||||||||||| ||||| ||||    
T  14741521 gttaactcg-gtcaaactcgtcaaactttccgattttactagaaatcgagtttacctccgagt 14741460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 370 - 432
Target Start/End: Original strand, 44256418 - 44256479
Alignment:
Q  370 gttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctctgagt 432  Q
    |||||||| |||||||||||| |||| || |||||||||||||||||||||| ||||| ||||    
T  44256418 gttaactc-agtcaaactcgttaaaccttccgattttaccagaaatcgagtttacctcagagt 44256479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 338 - 421
Target Start/End: Complemental strand, 19594338 - 19594255
Alignment:
Q  338 cgagtttacccgagtttaccgagtttgac-cgagttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagtt 421  Q
    ||||||||| | |||||||||||||| || || ||||||||| |||||||||||||||| || |||||| |||| ||| ||||||    
T  19594338 cgagtttacacaagtttaccgagtttaacacgtgttaactcg-gtcaaactcgtcaaactttccgatttcaccaaaaaccgagtt 19594255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 179 - 215
Target Start/End: Original strand, 26201359 - 26201395
Alignment:
Q  179 ataataaagcattatgttcaactaaacatcaaaatac 215  Q
    |||||||| ||||||||||||||||||||||||||||    
T  26201359 ataataaaacattatgttcaactaaacatcaaaatac 26201395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 421
Target Start/End: Complemental strand, 21067922 - 21067872
Alignment:
Q  370 gttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagtt 421  Q
    |||||||| |||||||||||| |||| || ||||||||||||||||||||||    
T  21067922 gttaactc-agtcaaactcgttaaaccttccgattttaccagaaatcgagtt 21067872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 410
Target Start/End: Complemental strand, 34656731 - 34656661
Alignment:
Q  340 agtttacccgagtttaccgagtttgac-cgagttaactcgagtcaaactcgtcaaacattgcgattttacca 410  Q
    ||||||| |||||||||||||||| || || ||||||||| |||||||||||||||| || |||||| ||||    
T  34656731 agtttacacgagtttaccgagtttaacacgtgttaactcg-gtcaaactcgtcaaacttttcgatttcacca 34656661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 432
Target Start/End: Original strand, 4639879 - 4639940
Alignment:
Q  370 gttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctctgagt 432  Q
    ||||||||| |||||||||||||||  || |||||||||||||||| ||||| ||||| ||||    
T  4639879 gttaactcg-gtcaaactcgtcaaaatttccgattttaccagaaatagagtttacctccgagt 4639940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 427
Target Start/End: Complemental strand, 7993699 - 7993643
Alignment:
Q  370 gttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctc 427  Q
    |||||||| |||||||||||| |||| || ||||||||||||||| |||||| |||||    
T  7993699 gttaactc-agtcaaactcgttaaaccttccgattttaccagaaaccgagtttacctc 7993643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 215
Target Start/End: Complemental strand, 27149275 - 27149246
Alignment:
Q  186 agcattatgttcaactaaacatcaaaatac 215  Q
    ||||||||||||||||||||||||||||||    
T  27149275 agcattatgttcaactaaacatcaaaatac 27149246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 426
Target Start/End: Complemental strand, 37328449 - 37328394
Alignment:
Q  370 gttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacct 426  Q
    |||||||| |||||||| ||| |||| || |||||||||||||||||||||| ||||    
T  37328449 gttaactc-agtcaaacacgttaaaccttccgattttaccagaaatcgagtttacct 37328394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 304
Target Start/End: Complemental strand, 42043801 - 42043750
Alignment:
Q  252 aaccatccaaaaaggcaagtttcacatgttcctaaagttattaataaaactat 304  Q
    ||||||||||||| ||||||| |||||||| ||| |||| |||||||||||||    
T  42043801 aaccatccaaaaaagcaagtt-cacatgtttctagagttgttaataaaactat 42043750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 9e-37; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 191 - 432
Target Start/End: Original strand, 49971428 - 49971662
Alignment:
Q  191 tatgttcaactaaacatcaaaatacnnnnnnn-cttgcaaaatcataagtcgcttaagttttaaccatccaaaaaggcaagtttcacatgttcctaaagt 289  Q
    |||||||||||||||||||||||||        ||| |||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||    
T  49971428 tatgttcaactaaacatcaaaatacaaaataaacttacaaaatcataagtctcttaagtgttaaccatccaaaaaggcaagtttcacaagttcctaaagt 49971527  T
Q  290 tattaataaaactatnnnnnnnnntta---gacttacattccgattttactcgagtttacccgagtttaccgagtttgaccgagttaactcgagtcaaac 386  Q
    ||   ||||||||||           |   |||||| |||||||||||||||||||||||||||         |||||||||||||||||||||||||||    
T  49971528 ta---ataaaactatataaaaaaaaaaattgacttaaattccgattttactcgagtttacccga---------gtttgaccgagttaactcgagtcaaac 49971615  T
Q  387 tcgtcaa-acattgcgattttaccagaaatcgagttaacctctgagt 432  Q
    ||||||| ||||| ||||||||||||||| |||||| ||||| ||||    
T  49971616 tcgtcaacacatttcgattttaccagaaaacgagtttacctccgagt 49971662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 179 - 353
Target Start/End: Complemental strand, 52182616 - 52182441
Alignment:
Q  179 ataataaagcattatgttcaactaaacatcaaaatacnnnnnnn-cttgcaaaatcataagtcgcttaagttttaaccatccaaaaaggcaagtttcaca 277  Q
    |||||||| |||||| ||||| |||||||||||||||        |||||||||||||||||| |||  || ||||||||||||||| | ||| ||||||    
T  52182616 ataataaaacattatattcaattaaacatcaaaatacaaaataaacttgcaaaatcataagtctcttcggtcttaaccatccaaaaaagtaagcttcaca 52182517  T
Q  278 tgttcctaaagttattaataaaactatnnnnnnnnnttagacttacattccgattttactcgagtttacccgagtt 353  Q
     |||||||||||| |||||||||||||         ||||||||||||||| ||||||||||||||||||| ||||    
T  52182516 agttcctaaagttgttaataaaactatcaaaaagaattagacttacattcctattttactcgagtttaccctagtt 52182441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 342 - 432
Target Start/End: Original strand, 27257833 - 27257924
Alignment:
Q  342 tttacccgagtttacc-gagtttgaccgagttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctctgagt 432  Q
    ||||| |||||||||| |||||||||||| ||||||| |||||||||||||||||||| ||||||||||  ||||| |||| ||||| ||||    
T  27257833 tttactcgagtttacccgagtttgaccgaattaactctagtcaaactcgtcaaacattccgattttaccgaaaatcaagtttacctcggagt 27257924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 370 - 432
Target Start/End: Complemental strand, 26757731 - 26757670
Alignment:
Q  370 gttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctctgagt 432  Q
    ||||||||| |||||||||||||||| || |||||||||||||||||||||| ||||||||||    
T  26757731 gttaactcg-gtcaaactcgtcaaactttccgattttaccagaaatcgagtttacctctgagt 26757670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 369 - 427
Target Start/End: Complemental strand, 52182444 - 52182386
Alignment:
Q  369 agttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctc 427  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||||| || |||||    
T  52182444 agttaactcgagtcgaactcgtcaaacatttcgattttaccagaaatcgaatttacctc 52182386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 252 - 304
Target Start/End: Complemental strand, 19863351 - 19863299
Alignment:
Q  252 aaccatccaaaaaggcaagtttcacatgttcctaaagttattaataaaactat 304  Q
    ||||||||||||| |||||||||||| |||||||||||| |||||||||||||    
T  19863351 aaccatccaaaaaagcaagtttcacaagttcctaaagttgttaataaaactat 19863299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 370 - 432
Target Start/End: Original strand, 1243311 - 1243372
Alignment:
Q  370 gttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctctgagt 432  Q
    ||||||||| |||||||||||||||| || |||||||||||||||||||||| ||||| ||||    
T  1243311 gttaactcg-gtcaaactcgtcaaactttccgattttaccagaaatcgagtttacctccgagt 1243372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 370 - 432
Target Start/End: Complemental strand, 4005183 - 4005122
Alignment:
Q  370 gttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctctgagt 432  Q
    ||||||||| |||||||||||||||| || |||||||||||||||||||||| ||||| ||||    
T  4005183 gttaactcg-gtcaaactcgtcaaactttccgattttaccagaaatcgagtttacctccgagt 4005122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 370 - 432
Target Start/End: Complemental strand, 8147433 - 8147372
Alignment:
Q  370 gttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctctgagt 432  Q
    ||||||||| |||||||||||||||| |||| |||||||||||||||||||| ||||| ||||    
T  8147433 gttaactcg-gtcaaactcgtcaaactttgcaattttaccagaaatcgagtttacctccgagt 8147372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 370 - 432
Target Start/End: Complemental strand, 41353537 - 41353476
Alignment:
Q  370 gttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctctgagt 432  Q
    ||||||||| |||||||||||||||| || |||||||||||||||||||||| ||||| ||||    
T  41353537 gttaactcg-gtcaaactcgtcaaactttccgattttaccagaaatcgagtttacctccgagt 41353476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 338 - 432
Target Start/End: Original strand, 33886832 - 33886926
Alignment:
Q  338 cgagtttacccgagtttaccgagtttgac-cgagttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctctgagt 432  Q
    ||||||||| |||||||||||||||| || || ||| ||||| |||||||||||||||| || |||||| |||| ||| |||||| ||||| ||||    
T  33886832 cgagtttacacgagtttaccgagtttaacacgtgttcactcg-gtcaaactcgtcaaactttccgatttcaccaaaaaccgagtttacctccgagt 33886926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 338 - 432
Target Start/End: Complemental strand, 33957418 - 33957324
Alignment:
Q  338 cgagtttacccgagtttaccgagtttgac-cgagttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctctgagt 432  Q
    ||||||||| |||||||||||||||| || || ||| ||||| |||||||||||||||| || |||||| |||| ||| |||||| ||||| ||||    
T  33957418 cgagtttacacgagtttaccgagtttaacacgtgttcactcg-gtcaaactcgtcaaactttccgatttcaccaaaaaccgagtttacctccgagt 33957324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 370 - 421
Target Start/End: Complemental strand, 51107008 - 51106958
Alignment:
Q  370 gttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagtt 421  Q
    ||||||||| |||||||||||||||| || ||||||||||||||||||||||    
T  51107008 gttaactcg-gtcaaactcgtcaaactttccgattttaccagaaatcgagtt 51106958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 370 - 432
Target Start/End: Complemental strand, 9192140 - 9192079
Alignment:
Q  370 gttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctctgagt 432  Q
    ||||||||| |||||||||||||||| ||  ||||||||||||||||||||| ||||| ||||    
T  9192140 gttaactcg-gtcaaactcgtcaaactttctgattttaccagaaatcgagtttacctccgagt 9192079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 370 - 432
Target Start/End: Complemental strand, 45273110 - 45273049
Alignment:
Q  370 gttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctctgagt 432  Q
    |||||||| ||||||||||||||||| || ||||||||||||||| |||||| ||||| ||||    
T  45273110 gttaactc-agtcaaactcgtcaaaccttccgattttaccagaaaccgagtttacctcagagt 45273049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 370 - 432
Target Start/End: Original strand, 47371580 - 47371641
Alignment:
Q  370 gttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctctgagt 432  Q
    ||||||||| |||||||||| ||||| || |||||||||||||||||||||| ||||| ||||    
T  47371580 gttaactcg-gtcaaactcggcaaaccttccgattttaccagaaatcgagtttacctccgagt 47371641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 252 - 304
Target Start/End: Original strand, 42303987 - 42304040
Alignment:
Q  252 aaccatccaaaaag-gcaagtttcacatgttcctaaagttattaataaaactat 304  Q
    |||||||||||||  | |||||||||| ||||||||||||||||||||||||||    
T  42303987 aaccatccaaaaaaagaaagtttcacaagttcctaaagttattaataaaactat 42304040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 252 - 301
Target Start/End: Original strand, 47371176 - 47371225
Alignment:
Q  252 aaccatccaaaaaggcaagtttcacatgttcctaaagttattaataaaac 301  Q
    ||||||||||||| |||||||||||| |||| ||||||| ||||||||||    
T  47371176 aaccatccaaaaaagcaagtttcacaagttcttaaagttgttaataaaac 47371225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 370 - 430
Target Start/End: Original strand, 35177215 - 35177274
Alignment:
Q  370 gttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctctga 430  Q
    ||||||||| |||||||||||||| | || |||||||| ||||||||||||| ||||||||    
T  35177215 gttaactcg-gtcaaactcgtcaatccttccgattttatcagaaatcgagtttacctctga 35177274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 252 - 304
Target Start/End: Original strand, 49236604 - 49236656
Alignment:
Q  252 aaccatccaaaaaggcaagtttcacatgttcctaaagttattaataaaactat 304  Q
    ||||||||||||| | |||||||| | |||||||||||| |||||||||||||    
T  49236604 aaccatccaaaaaagaaagtttcataagttcctaaagttgttaataaaactat 49236656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 432
Target Start/End: Complemental strand, 34019268 - 34019174
Alignment:
Q  338 cgagtttacccgagtttaccgagtttgac-cgagttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctctgagt 432  Q
    ||||||||| |||||||||||| ||| || || ||||||||| ||||| |||||||||| || |||||| |||| ||||||| || ||||| ||||    
T  34019268 cgagtttacacgagtttaccgaatttaacacgtgttaactcg-gtcaacctcgtcaaactttccgatttcaccaaaaatcgaatttacctccgagt 34019174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 432
Target Start/End: Original strand, 34751544 - 34751638
Alignment:
Q  338 cgagtttacccgagtttaccgagtttgac-cgagttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctctgagt 432  Q
    ||||||||| |||||||||||||||| || || ||||||||| |||||||| | ||||| || |||||| |||| ||| |||||| ||||| ||||    
T  34751544 cgagtttacacgagtttaccgagtttaacacgtgttaactcg-gtcaaacttggcaaactttccgatttcaccaaaaaccgagtttacctccgagt 34751638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 432
Target Start/End: Original strand, 5209373 - 5209434
Alignment:
Q  370 gttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctctgagt 432  Q
    |||||||||| ||||||||||||||| ||  ||||| ||||||||||||||| ||||| ||||    
T  5209373 gttaactcga-tcaaactcgtcaaactttctgatttcaccagaaatcgagttgacctccgagt 5209434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 416
Target Start/End: Original strand, 11579105 - 11579150
Alignment:
Q  370 gttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatc 416  Q
    ||||||||| |||||||||||||||| || |||||||||||||||||    
T  11579105 gttaactcg-gtcaaactcgtcaaactttccgattttaccagaaatc 11579150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 432
Target Start/End: Complemental strand, 1108491 - 1108407
Alignment:
Q  348 cgagtttaccgagtttgac-cgagttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctctgagt 432  Q
    |||||||| ||||||| || || |||||||| ||||||||||||||||| || |||||| |||| ||| |||||| ||||| ||||    
T  1108491 cgagtttatcgagtttaacacgcgttaactc-agtcaaactcgtcaaactttccgatttcaccaaaaaccgagtttacctccgagt 1108407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 267 - 304
Target Start/End: Original strand, 28403602 - 28403639
Alignment:
Q  267 caagtttcacatgttcctaaagttattaataaaactat 304  Q
    ||||||||||| |||||||||||| |||||||||||||    
T  28403602 caagtttcacaagttcctaaagttgttaataaaactat 28403639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 304
Target Start/End: Complemental strand, 3593730 - 3593678
Alignment:
Q  252 aaccatccaaaaaggcaagtttcacatgttcctaaagttattaataaaactat 304  Q
    ||||||||||||| | |||||||||| || | ||||||| |||||||||||||    
T  3593730 aaccatccaaaaaagtaagtttcacaagtccgtaaagttgttaataaaactat 3593678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 304
Target Start/End: Original strand, 49452667 - 49452718
Alignment:
Q  252 aaccatccaaaaaggcaagtttcacatgttcctaaagttattaataaaactat 304  Q
    |||||||||||||  ||||||||||| ||||||||| || |||||||||||||    
T  49452667 aaccatccaaaaaa-caagtttcacaagttcctaaatttgttaataaaactat 49452718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 332 - 432
Target Start/End: Original strand, 31996214 - 31996314
Alignment:
Q  332 tttactcgagtttacccgagtttaccgagtttgac-cgagttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctctga 430  Q
    ||||||||||||||| |||||||||||||||| || || ||||||||| |||||||||||||||| || |||||| |||| |||||||||| ||||| ||    
T  31996214 tttactcgagtttacacgagtttaccgagtttaacacgtgttaactcg-gtcaaactcgtcaaactttccgatttcaccaaaaatcgagtttacctccga 31996312  T
Q  431 gt 432  Q
    ||    
T  31996313 gt 31996314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 252 - 304
Target Start/End: Original strand, 28900438 - 28900490
Alignment:
Q  252 aaccatccaaaaaggcaagtttcacatgttcctaaagttattaataaaactat 304  Q
    ||||||||||||| |||||||||||| |||||||||||| |||||||||||||    
T  28900438 aaccatccaaaaaagcaagtttcacaagttcctaaagttgttaataaaactat 28900490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 370 - 432
Target Start/End: Original strand, 1463676 - 1463737
Alignment:
Q  370 gttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctctgagt 432  Q
    ||||||||| |||||||||||||||| || |||||||||||||||||||||| ||||| ||||    
T  1463676 gttaactcg-gtcaaactcgtcaaactttccgattttaccagaaatcgagtttacctccgagt 1463737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 370 - 432
Target Start/End: Complemental strand, 6788195 - 6788134
Alignment:
Q  370 gttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctctgagt 432  Q
    ||||||||| |||||||||||||||| || |||||||||||||||||||||| ||||| ||||    
T  6788195 gttaactcg-gtcaaactcgtcaaactttccgattttaccagaaatcgagtttacctccgagt 6788134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 252 - 304
Target Start/End: Complemental strand, 16439194 - 16439142
Alignment:
Q  252 aaccatccaaaaaggcaagtttcacatgttcctaaagttattaataaaactat 304  Q
    ||||||||||||| |||||||||||| ||| |||||||| |||||||||||||    
T  16439194 aaccatccaaaaaagcaagtttcacaagtttctaaagttgttaataaaactat 16439142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 339 - 426
Target Start/End: Complemental strand, 21199681 - 21199594
Alignment:
Q  339 gagtttacccgagtttaccgagtttgaccga-gttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacct 426  Q
    |||||||| |||||||||||||||| ||  | ||||||||| |||||||||||||||| || |||||| |||| |||||||||| ||||    
T  21199681 gagtttacacgagtttaccgagtttaacacatgttaactcg-gtcaaactcgtcaaactttccgatttcaccaaaaatcgagtttacct 21199594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 348 - 432
Target Start/End: Original strand, 8779563 - 8779647
Alignment:
Q  348 cgagtttaccgagtttgac-cgagttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctctgagt 432  Q
    |||||||||||||||| || |||||||||| | |||||||||||||||| || |||||| |||| ||| |||||| ||||| ||||    
T  8779563 cgagtttaccgagtttaacacgagttaacttg-gtcaaactcgtcaaactttccgatttcaccaaaaaccgagtttacctccgagt 8779647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 380 - 421
Target Start/End: Original strand, 31535074 - 31535115
Alignment:
Q  380 gtcaaactcgtcaaacattgcgattttaccagaaatcgagtt 421  Q
    |||||||||||||||| || ||||||||||||||||||||||    
T  31535074 gtcaaactcgtcaaacctttcgattttaccagaaatcgagtt 31535115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 371 - 432
Target Start/End: Original strand, 31975658 - 31975718
Alignment:
Q  371 ttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctctgagt 432  Q
    |||||||| |||||||||||||||| || ||||||||| |||||||||||| ||||| ||||    
T  31975658 ttaactcg-gtcaaactcgtcaaaccttccgattttacaagaaatcgagtttacctcagagt 31975718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 432
Target Start/End: Complemental strand, 13461462 - 13461407
Alignment:
Q  377 cgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctctgagt 432  Q
    ||||||||||||||||||||||  |||||||||| ||| |||||| ||||| ||||    
T  13461462 cgagtcaaactcgtcaaacattctgattttaccaaaaaccgagtttacctccgagt 13461407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 432
Target Start/End: Complemental strand, 2606990 - 2606929
Alignment:
Q  370 gttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctctgagt 432  Q
    ||||||||| ||||||||| |||||| ||  ||||||||||||||||||||| ||||| ||||    
T  2606990 gttaactcg-gtcaaactcatcaaaccttctgattttaccagaaatcgagtttacctcagagt 2606929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 380 - 432
Target Start/End: Original strand, 10113794 - 10113846
Alignment:
Q  380 gtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctctgagt 432  Q
    |||||||||||||||| || ||||||||||| ||| |||||| ||||| ||||    
T  10113794 gtcaaactcgtcaaactttccgattttaccaaaaaacgagtttacctccgagt 10113846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 427
Target Start/End: Complemental strand, 16438789 - 16438745
Alignment:
Q  383 aaactcgtcaaacattgcgattttaccagaaatcgagttaacctc 427  Q
    ||||||||||||| || |||||||||||||| ||||||| |||||    
T  16438789 aaactcgtcaaaccttccgattttaccagaagtcgagtttacctc 16438745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 304
Target Start/End: Complemental strand, 24194965 - 24194913
Alignment:
Q  252 aaccatccaaaaaggcaagtttcacatgttcctaaagttattaataaaactat 304  Q
    ||||||||||||| | ||||||||||  ||||||||||| ||| |||||||||    
T  24194965 aaccatccaaaaaagaaagtttcacaaattcctaaagttgttattaaaactat 24194913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 215
Target Start/End: Complemental strand, 28041982 - 28041946
Alignment:
Q  179 ataataaagcattatgttcaactaaacatcaaaatac 215  Q
    |||||||| |||||||||||||||||| |||||||||    
T  28041982 ataataaaacattatgttcaactaaacctcaaaatac 28041946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0473 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0473
Description:

Target: scaffold0473; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 223 - 297
Target Start/End: Original strand, 1546 - 1620
Alignment:
Q  223 cttgcaaaatcataagtcgcttaagttttaaccatccaaaaaggcaagtttcacatgttcctaaagttattaata 297  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||||||| |||| |||| | ||||| ||||||    
T  1546 cttgcaaaatcataagtctcttaagtcttaaccatccaaaaaggcaagttccacaagttcatgaagttgttaata 1620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0573 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0573
Description:

Target: scaffold0573; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 252 - 304
Target Start/End: Complemental strand, 9356 - 9304
Alignment:
Q  252 aaccatccaaaaaggcaagtttcacatgttcctaaagttattaataaaactat 304  Q
    ||||||||||||| |||||||||||| |||||||||||| |||||||||||||    
T  9356 aaccatccaaaaaagcaagtttcacaagttcctaaagttgttaataaaactat 9304  T

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Target: scaffold0421 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0421
Description:

Target: scaffold0421; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 338 - 432
Target Start/End: Complemental strand, 1828 - 1733
Alignment:
Q  338 cgagtttac-ccgagtttaccgagtttgac-cgagttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctctgagt 432  Q
    ||||||||| ||||||||| | ||||| || || ||||||||| |||||||||||||||| || |||||| |||| |||||||||| ||||| ||||    
T  1828 cgagtttactccgagtttaacaagtttaacacgtgttaactcg-gtcaaactcgtcaaactttccgatttcaccaaaaatcgagtttacctccgagt 1733  T

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Target: scaffold0110 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 379 - 427
Target Start/End: Original strand, 39301 - 39349
Alignment:
Q  379 agtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctc 427  Q
    ||||||||||||||||| || ||||||||||||||| |||||| |||||    
T  39301 agtcaaactcgtcaaacctttcgattttaccagaaaccgagttgacctc 39349  T

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Target: scaffold0013 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 370 - 426
Target Start/End: Complemental strand, 89375 - 89320
Alignment:
Q  370 gttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacct 426  Q
    |||||||||| ||||||||||||||| || | |||||||||||||||||||| ||||    
T  89375 gttaactcga-tcaaactcgtcaaaccttccaattttaccagaaatcgagtttacct 89320  T

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Target: scaffold0013; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 252 - 300
Target Start/End: Complemental strand, 89778 - 89730
Alignment:
Q  252 aaccatccaaaaaggcaagtttcacatgttcctaaagttattaataaaa 300  Q
    ||||||||||||| | |||||||||| |||||||||||| |||||||||    
T  89778 aaccatccaaaaaagaaagtttcacaagttcctaaagttgttaataaaa 89730  T

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Target: scaffold1128 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold1128
Description:

Target: scaffold1128; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 432
Target Start/End: Original strand, 910 - 971
Alignment:
Q  370 gttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctctgagt 432  Q
    ||||||||| ||||||||| |||||| || ||||||||||||||| |||||| ||||| ||||    
T  910 gttaactcg-gtcaaactcatcaaactttccgattttaccagaaaccgagtttacctccgagt 971  T

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Target: scaffold0383 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0383
Description:

Target: scaffold0383; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 432
Target Start/End: Original strand, 16687 - 16748
Alignment:
Q  370 gttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctctgagt 432  Q
    |||||||| |||||||||||| |||| || ||||||||||||||| |||||| ||||| ||||    
T  16687 gttaactc-agtcaaactcgttaaacctttcgattttaccagaaaccgagtttacctcagagt 16748  T

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Target: scaffold0152 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 432
Target Start/End: Original strand, 20923 - 20984
Alignment:
Q  370 gttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctctgagt 432  Q
    |||||||| |||||||||||| |||| || ||||||||||||||| |||||| ||||| ||||    
T  20923 gttaactc-agtcaaactcgttaaacctttcgattttaccagaaaccgagtttacctcagagt 20984  T

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Target: scaffold0152; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 432
Target Start/End: Complemental strand, 28878 - 28817
Alignment:
Q  370 gttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctctgagt 432  Q
    |||||||| |||||||||||| |||| || ||||||||||||||| |||||| ||||| ||||    
T  28878 gttaactc-agtcaaactcgttaaacctttcgattttaccagaaaccgagtttacctcagagt 28817  T

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Target: scaffold0116 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 300
Target Start/End: Original strand, 5069 - 5146
Alignment:
Q  223 cttgcaaaatcataagtcgcttaagttttaaccatccaaaaaggcaagtttcacatgttcctaaagttattaataaaa 300  Q
    |||||||||||||||||   |||||| ||||||||||||||||  ||||| |||| |||  ||||||| ||| |||||    
T  5069 cttgcaaaatcataagttttttaagtcttaaccatccaaaaagaaaagttccacaagtttataaagttgttagtaaaa 5146  T

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