View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13975_low_32 (Length: 446)
Name: NF13975_low_32
Description: NF13975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13975_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 26 - 402
Target Start/End: Complemental strand, 25798771 - 25798381
Alignment:
| Q |
26 |
ataataatctggtgtgactacaaccacactatgccttatgatggatccacctctgttttgcatgacatgataagtgtttatcgcaagtagatattaaaca |
125 |
Q |
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| T |
25798771 |
ataataatttggtgtggttacaaccataatatgccttatgatggatccacctctgcagtgcatgacatgataagtgtttatcctaagtacatattaaaca |
25798672 |
T |
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| Q |
126 |
ttccacaaataacaaatac-----aagaaaaattaatttttaactttttgaggaatgaattggattaagtatacaaaaagtaatcatcnnnnnnngttga |
220 |
Q |
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| T |
25798671 |
tttcacaaataacaaatacttttgaagaaaaattaatttttaactttttgaggaatgaattggattaggtatacaaaaagtaatcatctttttttgttga |
25798572 |
T |
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| Q |
221 |
aggaatactactcatctttgtttcgtagctctaaacactttagcgttcataacaaatatattattgatccaccacttgacttcacacaagtttgaaatta |
320 |
Q |
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| T |
25798571 |
aggaatactactcatctttgtttcgtagctctaaacactttagcgttcataacaaatatattattgatccaccacttgacttcacacaagtttg-aatta |
25798473 |
T |
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| Q |
321 |
acaaaccccactcccccaaaggttgactacaata----------tttcattttcatagcaaaataaacaaattccttaactaagaaaattaa |
402 |
Q |
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| T |
25798472 |
acaaaccccactcccccaaaggttgactacaataaacttttctttttcattttcatagcaaaataaacgaattccttaactaagaaaattaa |
25798381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 25586252 - 25586306
Alignment:
| Q |
11 |
gaagaaaaaagttagataataatctggtgtgactacaaccacactatgccttatg |
65 |
Q |
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| T |
25586252 |
gaagaaaaaaattgggtaataatttggtgtggctacaaccacactatgccttatg |
25586306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 4841845 - 4841898
Alignment:
| Q |
27 |
taataatctggtgtgactacaaccacactatgccttatgatggatccacctctg |
80 |
Q |
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| T |
4841845 |
taataatctggtgtggctacaaccacaccataccttatggtgggtccacctctg |
4841898 |
T |
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