View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13975_low_33 (Length: 444)
Name: NF13975_low_33
Description: NF13975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13975_low_33 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 1 - 444
Target Start/End: Complemental strand, 3922874 - 3922431
Alignment:
| Q |
1 |
tgtgcattatacggcagacctttgtttcctgcagtacactacttcttaccattgtcgcctacacagtttgatactttaagaaatcaagcttttcgtatta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3922874 |
tgtgcattatacggcagacctttgtttcctgcagtacactacttcttaccattgtcgcctacacagtttgatactttaagaaatcaagcttttcgcatta |
3922775 |
T |
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| Q |
101 |
tatcagtgagtttaagcgaggcggaaccagcacttagggaagaagttgtgtcttatatgcttgatatgagatcagatatgtggagtatgagaaaaggaat |
200 |
Q |
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| T |
3922774 |
tatcagtgagtttaagcgaggcggaaccggcacttagggaagaagttgtgtcttatatgcttgatatgagatcagatatgtggagtatgagaaaaggaat |
3922675 |
T |
|
| Q |
201 |
agcaaactataacaggatcatgagtcttattagttacnnnnnnnnnnnnnggaaatggttagaggacataaggcaatggaagaatccaattgaagcagtg |
300 |
Q |
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| T |
3922674 |
agcaaactataacaggatcatgagtcttattagttacttttttgctttttggaaatggttagaggacataaggcaatggaagaatccaattgaagcagtg |
3922575 |
T |
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| Q |
301 |
ctttttcatattttttgcttatgtgtgcttttgtatccagagccaatgatacctttggtgagtttctatcttttcaagattggtttggataattataatt |
400 |
Q |
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| T |
3922574 |
ctttttcatattttttgcttatgtgtgcttttgtatccagagccaatgatacctttggtgagtttctatcttttcaagattggtttggataattataatt |
3922475 |
T |
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| Q |
401 |
tcaagaagcatgagcatccttgtcacatagatgcaacattatct |
444 |
Q |
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| T |
3922474 |
tcaagaagcatgagcatccttgtcacatagatgcaacattatct |
3922431 |
T |
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Target: chr6 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 291 - 442
Target Start/End: Original strand, 34958057 - 34958208
Alignment:
| Q |
291 |
tgaagcagtgctttttcatattttttgcttatgtgtgcttttgtatccagagccaatgatacctttggtgagtttctatcttttcaagattggtttggat |
390 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34958057 |
tgaaacagtgctttttcatattttttgcttatgtgtgcttttgtatccagagccaatgatacctttggtgagtttctatcttttcaagattggtttggat |
34958156 |
T |
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| Q |
391 |
aattataatttcaagaagcatgagcatccttgtcacatagatgcaacattat |
442 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
34958157 |
aattataatttcaaaaagcatgagcatccttgtcacatagatgcaacattat |
34958208 |
T |
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