View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13975_low_35 (Length: 431)
Name: NF13975_low_35
Description: NF13975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13975_low_35 |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 14 - 262
Target Start/End: Original strand, 32038381 - 32038629
Alignment:
| Q |
14 |
ttcttgttggaacatttttgaaacactttaaattgtaaattgttgttgtatttgttgaacacttaaaattatttctgcaaaaaatcgaacatgagcatac |
113 |
Q |
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| T |
32038381 |
ttcttgttggaacatttttgaaacactttaaattgtaaattgttgttgtatttgttgaacacttaaaattatttttgcaaaaaatcgaacacgagcatac |
32038480 |
T |
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| Q |
114 |
aaaaataattttgtcaggtgacaaactgggttgagttgcggattaggttgctctctttaagagttatgcagttctgttttaatagtgcaacaattctttc |
213 |
Q |
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| T |
32038481 |
aaaaataattttgtcaggtgacaaactgggttgagttgcggactaagttgctctatttaagagttatgcggttctgttttaatagtgcaacaattctttc |
32038580 |
T |
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| Q |
214 |
ttgtctcgtcgtccttaggataaagcaactctccaactcttgagtatga |
262 |
Q |
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| T |
32038581 |
ttgtctcgtcgttcttaggataaagcaactctccaactctcgagtatga |
32038629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 272 - 325
Target Start/End: Original strand, 32038924 - 32038977
Alignment:
| Q |
272 |
tatttaacttacaattcaaaacctttaatgaagataatcaaaacttcgaagaac |
325 |
Q |
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| T |
32038924 |
tatttaacttacaattcaaaaccttcaatgcagataatcaaaacttggaagaac |
32038977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 127
Target Start/End: Original strand, 14918387 - 14918465
Alignment:
| Q |
49 |
taaattgttgttgtatttgttgaacacttaaaattatttctgcaaaaaatcgaacatgagcatacaaaaataattttgt |
127 |
Q |
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| T |
14918387 |
taaattgttgctgcatctatcgaacacttggaattatttctgcaaaaaatcatacttgaacacacaaaaataattttgt |
14918465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 263
Target Start/End: Complemental strand, 7163237 - 7163172
Alignment:
| Q |
198 |
gtgcaacaattctttcttgtctcgtcgtccttaggataaagcaactctccaactcttgagtatgaa |
263 |
Q |
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| T |
7163237 |
gtgcagcaattctttcttaccttgtcgtcattaggataaaacaactctcccaaacttgagtatgaa |
7163172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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