View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13975_low_36 (Length: 425)
Name: NF13975_low_36
Description: NF13975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13975_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 120; Significance: 3e-61; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 10 - 153
Target Start/End: Complemental strand, 38053189 - 38053046
Alignment:
| Q |
10 |
cacagagtggacggaaatataattcaacaaaccaaattaattcgttaggtcgtttgattagtattcgtaatatcaatcattttccatattataaataaca |
109 |
Q |
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| T |
38053189 |
cacagagtggtcggaaatataattcaacgaatcaaattaatttgttagatcgtttgattagtattcgtaatatcaatcattttccatattataagtaaca |
38053090 |
T |
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| Q |
110 |
ttcctaacatgtctaattaatgcaaagtttaacatagaataaag |
153 |
Q |
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| T |
38053089 |
ttcctaacatgtctaattaatgcaaagtttaacatagaataaag |
38053046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 254 - 412
Target Start/End: Complemental strand, 38052670 - 38052512
Alignment:
| Q |
254 |
ttggctttcaacttctgaagcgtggtgaacttatatattcgtttagtggtnnnnnnnnttgaggtaccggattgaagagattgaatgctttttgtatata |
353 |
Q |
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| T |
38052670 |
ttggctttcaacttctcaagcgtggtgaacttatatattcgtttagtggtaaaaaaaattgaggtaccggattgaagagattgaatattttttgtatata |
38052571 |
T |
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| Q |
354 |
cttgtgtcatgtccaaataagttatctagatgtctcttaacgattcttaatgtccaaat |
412 |
Q |
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| T |
38052570 |
cttgtgtcatgtccaaataagttctctagatgtctcttaacgactcttaatgtccaaat |
38052512 |
T |
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