View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13975_low_37 (Length: 415)
Name: NF13975_low_37
Description: NF13975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13975_low_37 |
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Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 11 - 396
Target Start/End: Complemental strand, 42800777 - 42800391
Alignment:
| Q |
11 |
catcatcatcaattcatcatgcagttacacagagagagaaaagaagagggaataatggcaatggctacaatgagagagatgccaaggagccctgaagcca |
110 |
Q |
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| T |
42800777 |
catcatcatcaattcatcatgcagttacacagagagagaaaagaagagggagtaatggcaatggctacaatgagagagatgccaaggagccctgaagcca |
42800678 |
T |
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| Q |
111 |
aacttgggaggagagttgaagatctatgggatgttcaagaggcacaattaagtcctaatgacaaacttaatgcttgttttgaaagcatacctgtttctgc |
210 |
Q |
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| T |
42800677 |
aacttgggatgagagttgaagatctatgggatgttcaagaggcacaattaagtcctaatgacaaacttaatgcttgttttgaaagcatacctgtttctgc |
42800578 |
T |
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| Q |
211 |
ttttcctttgcctgctaaaaaccaaggtagtttagtgtctatgtatgtatgtgtctgattttgattgaat-nnnnnnnnngtgattttgatcacacccag |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
42800577 |
ttttcctttgcctgctaaaaaccaaggtagtttagtgtctatgtatgtatgtgtctgattttgattgaataaaagaaaaagtgattttgatcacacccag |
42800478 |
T |
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| Q |
310 |
atgaaaatttatgtgcatgtttggtatcacgatagtatatcagaatcatggtggttcaccgtgattctgacaaaccaaccaactatg |
396 |
Q |
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| T |
42800477 |
atgaaaatttatgtgcatgtttggtatcacgatagtatatcagaatcatggtggttcaccgtgattctgacaaaccaaccaactatg |
42800391 |
T |
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