View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13975_low_38 (Length: 415)
Name: NF13975_low_38
Description: NF13975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13975_low_38 |
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Alignment Details
Target: chr3 (Bit Score: 166; Significance: 1e-88; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 195 - 396
Target Start/End: Original strand, 8248229 - 8248430
Alignment:
| Q |
195 |
ataccttaacaagctttttcagctctggaagctgtaaagctatatcatcctctcttattgaactagttgaatcatcaaaagggatgtggttacatgaggt |
294 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||| |
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| T |
8248229 |
ataccttaacaagctttttcagctctggaagctgtaaagctatatcatcctctcttattgaacctcttaaatcatcacaagggatgtggttacatgaggt |
8248328 |
T |
|
| Q |
295 |
tgttttctgatatacccattggtctctttggtatctttgtaaagagtgtttctcagtgaaaggtgaggttgatgaagttgtgcagttgattgaggaaatg |
394 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |
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| T |
8248329 |
tgttttctgataaacccattggtctctttggtatctttgtaaagagtgtttctcagtgaaaggtgaggttgatgaggttgtgcaggagattgaggaaatg |
8248428 |
T |
|
| Q |
395 |
gg |
396 |
Q |
| |
|
|| |
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| T |
8248429 |
gg |
8248430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 16 - 131
Target Start/End: Original strand, 8248050 - 8248165
Alignment:
| Q |
16 |
atccaaaacatcattactaaccaacctatcatacaacaacaaatcagcactcttaataactctaacagccttaacagtcaacaactcaggatcaccaggt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8248050 |
atccaaaacatcattactaaccaacctatcatacaacaacaaatcagcactcttaataactctaacagccttaacagtcaacaactcaggatcaccaggt |
8248149 |
T |
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| Q |
116 |
cctgttccaaccaaaa |
131 |
Q |
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|||||||||||||||| |
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| T |
8248150 |
cctgttccaaccaaaa |
8248165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 108; Significance: 4e-54; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 16 - 131
Target Start/End: Original strand, 12836220 - 12836335
Alignment:
| Q |
16 |
atccaaaacatcattactaaccaacctatcatacaacaacaaatcagcactcttaataactctaacagccttaacagtcaacaactcaggatcaccaggt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
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| T |
12836220 |
atccaaaacatcattactaaccaacctatcatacaacaacaaatcagcactcttaataactctaacagccttaagagtcaacaattcaggatcaccaggt |
12836319 |
T |
|
| Q |
116 |
cctgttccaaccaaaa |
131 |
Q |
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|||||||||||||||| |
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| T |
12836320 |
cctgttccaaccaaaa |
12836335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 195 - 396
Target Start/End: Original strand, 12836399 - 12836600
Alignment:
| Q |
195 |
ataccttaacaagctttttcagctctggaagctgtaaagctatatcatcctctcttattgaactagttgaatcatcaaaagggatgtg------gttaca |
288 |
Q |
| |
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|||||| |||||| ||||||||||||||||||||||||||||| |||| ||||||| |||||||| |||||||| |||| ||||| |
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| T |
12836399 |
atacctgaacaagttttttcagctctggaagctgtaaagctatgtcatgttctctta---------ttgaatcaccaaaaggggtgtgattattattaca |
12836489 |
T |
|
| Q |
289 |
tgaggttgttttctgatatacccattggtctctttggtatctttgtaaagagtgtttctcagtgaaaggt---gaggttgatgaagttgtgcagttgatt |
385 |
Q |
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||||| || ||||| || ||||||||||||||||||||||||||| |||| ||| || ||||| ||| ||||| || || || |||||||||||| |
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| T |
12836490 |
ggaggtggtattctggtaaacccattggtctctttggtatctttgtgtggagtatttttctgtgaagggtgaagaggtggaggatgtggtgcagttgatt |
12836589 |
T |
|
| Q |
386 |
gaggaaatggg |
396 |
Q |
| |
|
||||||||||| |
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|
| T |
12836590 |
gaggaaatggg |
12836600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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