View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13975_low_4 (Length: 637)
Name: NF13975_low_4
Description: NF13975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13975_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-138; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 31 - 350
Target Start/End: Original strand, 49869580 - 49869903
Alignment:
| Q |
31 |
tatttggattgcggttctctttgttatatggaaagatcatgatagaaggattttccacaataagatgaatcaacttgtgtcgccatcaaaaaaggttaag |
130 |
Q |
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| T |
49869580 |
tatttggattgcagttctctttgttatatggaaagatcatgatagaaggattttccataataagatgaatcaacttgtgtcgccaccaaaaaaggttaag |
49869679 |
T |
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| Q |
131 |
ctccaaatttattggtggttgaaagagtactttattttgtttgattttagtaaatgttaggaagattgttgaaaaatattgttcccaacactctcac--- |
227 |
Q |
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| T |
49869680 |
ctccaaacttattggtggttgaaagcgtactttattctgtttgattttagtaaatgttaggaagattgttgaaaaatattgttccaaacactctcacttt |
49869779 |
T |
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| Q |
228 |
accacactttataaataaatagactgatttataaaacacctcaagttaacat-aannnnnnnnaacaggatcaagtaagtcataaatagctaaaacttag |
326 |
Q |
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| T |
49869780 |
accacactttataaataaatagactgatttataaaacacctcaagttaacataaaaaaaaattaacaggatcaagtaagtcataaatagctaaaacttag |
49869879 |
T |
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| Q |
327 |
cacgtgccaaacacactttatatc |
350 |
Q |
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| T |
49869880 |
cacgtgccaaacacactttatatc |
49869903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 399 - 634
Target Start/End: Original strand, 49869952 - 49870187
Alignment:
| Q |
399 |
cgttactaagttatttggaatattattattannnnnnngaaagacatatttggaatattattgtgcaccaatctattttccttccccggcaatactgcct |
498 |
Q |
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| T |
49869952 |
cgttactaagttatttggaatattattattatttttttgaaagacatatttggaatattattgtgcaccaatctattttccttccccggcaatactgcct |
49870051 |
T |
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| Q |
499 |
gaaaatgacagcatcgtgtagaaagtgaaaggcactctgttgcaaccatttaaattttgcattttcatcaataattaactaactttgaatttcaaactat |
598 |
Q |
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| T |
49870052 |
gaaaatgacagcatcgtgtagaaagtgaaaggcactctgttgcaaccatttaaattttgcattttaatcaataattaactaactttcaatttcaaactat |
49870151 |
T |
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| Q |
599 |
atatggtctgatttaatgcatcacagtagaataatc |
634 |
Q |
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| T |
49870152 |
atatggtctgatttaatgcatcacagtagaataatc |
49870187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 45 - 177
Target Start/End: Complemental strand, 34675088 - 34674956
Alignment:
| Q |
45 |
ttctctttgttatatggaaagatcatgatagaaggattttccacaataagatgaatcaacttgtgtcgccatcaaaaaaggttaagctccaaatttattg |
144 |
Q |
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| T |
34675088 |
ttctcttggttatatggaaagatcgtaacagaaagattttccacaataagatggatcagcttatgtcactatcaaaaaaggttaagctccaaatttattg |
34674989 |
T |
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| Q |
145 |
gtggttgaaagagtactttattttgtttgattt |
177 |
Q |
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| T |
34674988 |
atggttgaaagcgtattttattatgttcgattt |
34674956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 29 - 166
Target Start/End: Original strand, 25057130 - 25057267
Alignment:
| Q |
29 |
attatttggattgcggttctctttgttatatggaaagatcatgatagaaggattttccacaataagatgaatcaacttgtgtcgccatcaaaaaaggtta |
128 |
Q |
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| T |
25057130 |
attatttggatttcggttctctttatcatatggaaggatcgtaagagaaggatttttcacaataagttggaatagcttgcgttgcttgcagaaaaggtta |
25057229 |
T |
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| Q |
129 |
agctccaaatttattggtggttgaaagagtactttatt |
166 |
Q |
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| T |
25057230 |
agctccaaacttactggtggttgaaagcgtactttatt |
25057267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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