View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13975_low_41 (Length: 400)
Name: NF13975_low_41
Description: NF13975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13975_low_41 |
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Alignment Details
Target: chr2 (Bit Score: 376; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Complemental strand, 30724814 - 30724431
Alignment:
| Q |
1 |
agaagctcttggttgaattcgaatattctctaaaaaatagatataatcaaacaaagtctaaataagaggagatatgaaggttaaagaatagtaacaaata |
100 |
Q |
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| T |
30724814 |
agaagctcttggttgaattcgaatattctctaaaaaatagatataatcaaacaaagtctaaataagaggagatatgaaggttaaagaatagtaacaaata |
30724715 |
T |
|
| Q |
101 |
tgctcattattactaaccttgaaaactagagtattgagaacaggagttttgtgaagtaagccaaaccaaacttcaccagtaatatagccaagatccaaat |
200 |
Q |
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| T |
30724714 |
tgctcattattactaaccttgaaaactagagtattgagaacaggagtcttgtgaagtaaaccaaaccaaacttcaccagtaatatagccaagatccaaat |
30724615 |
T |
|
| Q |
201 |
ggctcaacattgcaaatttaggtagaacagccacattttgttttgtcaaaacctgaatgacatagattaaggatacttgtttgcattgaaccatatggtc |
300 |
Q |
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| T |
30724614 |
ggctcaacattgcaaatttaggtagaacagccacattttgttttgtcaaaacctgaatgacatagattaaggatacttgtttgcattgaaccatatggtc |
30724515 |
T |
|
| Q |
301 |
tattaacaaactaataaacataattaactctttatttgaactgtgttaaaccgttaaccatgtaataaaattcaggagtatatg |
384 |
Q |
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| T |
30724514 |
tattaacaaactaataaacataattaactctttatttgaactgtgttaaaccgttaaccatgtaataaaattcaggagtatatg |
30724431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 109 - 273
Target Start/End: Complemental strand, 30717018 - 30716854
Alignment:
| Q |
109 |
attactaaccttgaaaactagagtattgagaacaggagttttgtgaagtaagccaaaccaaacttcaccagtaatatagccaagatccaaatggctcaac |
208 |
Q |
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| T |
30717018 |
attaccaaccttgaaaactagagtattgagaacaggagacttttgaagtaagcacaacaaaacttcatcactaacagagccaagatccaaatgggtcagc |
30716919 |
T |
|
| Q |
209 |
attgcaaatttaggtagaacagccacattttgttttgtcaaaacctgaatgacatagattaagga |
273 |
Q |
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| T |
30716918 |
attgcaaatttaggtagaagaaccatatttggttgtgtgagaacctggatgacaaacattaagga |
30716854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 30710693 - 30710443
Alignment:
| Q |
1 |
agaagctcttggttgaattcgaatattctctaaaaaatagatataatcaaacaaagtctaaataagaggagatatgaaggttaaagaatagtaacaaata |
100 |
Q |
| |
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|||||||||| ||||||||| |||||| |||| || |||||||||| ||| |||| ||||||||||||||||| | ||||| || || ||| ||| | |
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| T |
30710693 |
agaagctcttcattgaattcggatattccctaataagtagatataatgaaaagaagtttaaataagaggagatataattgttaa-gagta-taataaa-a |
30710597 |
T |
|
| Q |
101 |
tgctcattattactaaccttgaaaactagagtattgagaacaggagttttgtgaagtaagccaaaccaaacttcaccagtaatatagccaagatccaaat |
200 |
Q |
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| T |
30710596 |
tgttaatta---caaaccttgaaatctagaatagtgagaacaggagtcttctgaagcaagcccaacaaaacttcaccactaacaatgccaacatccaaat |
30710500 |
T |
|
| Q |
201 |
ggctcaacattgcaaatttaggtagaacagccacattttgttttgtcaaaacctgaa |
257 |
Q |
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||||||||||||||||||| |||| ||||| || |||| |||||| | |||||||| |
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|
| T |
30710499 |
ggctcaacattgcaaattttggtaaaacagtcatatttgattttgtgagaacctgaa |
30710443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 115 - 271
Target Start/End: Original strand, 11358822 - 11358978
Alignment:
| Q |
115 |
aaccttgaaaactagagtattgagaacaggagttttgtgaagtaagccaaaccaaacttcaccagtaatatagccaagatccaaatggctcaacattgca |
214 |
Q |
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||||| |||||||||||||||||||| ||||| || ||||| |||| | | ||||||||||| ||| | ||||||||||||||||||| ||||||||| |
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| T |
11358822 |
aacctggaaaactagagtattgagaaatggagtcttttgaagaaagctcatcaaaacttcaccactaacaaagccaagatccaaatggcttaacattgca |
11358921 |
T |
|
| Q |
215 |
aatttaggtagaacagccacattttgttttgtcaaaacctgaatgacatagattaag |
271 |
Q |
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||| |||||| ||| |||| ||||||| ||| | | |||| |||||| | |||||| |
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| T |
11358922 |
aatgtaggtaaaactgccattttttgttgtgtgagagcctggatgacaaacattaag |
11358978 |
T |
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