View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13975_low_42 (Length: 398)
Name: NF13975_low_42
Description: NF13975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13975_low_42 |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 382; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Complemental strand, 2754899 - 2754518
Alignment:
| Q |
1 |
tcaatactcacttgaacaaatttttcattcaagggttttgaaacatccatgcagggtttataatgaaaatgatgcaaagctattctatgttccattctat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2754899 |
tcaatactcacttgaacaaatttttcattcaagggttttgaaacatccatgcagggtttataatgaaaatgatgcaaagctattctatgttccattctat |
2754800 |
T |
|
| Q |
101 |
ggtggacttgatgtgttgagatggcatttcaaaaatgtttcaaatgatgttaaagatagtttaggtttggaattagttaagtggcttgagaaacaagtta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2754799 |
ggtggacttgatgtgttgagatggcatttcaaaaatgtttcaaatgatgttaaagatagtttaggtttggaattagttaagtggcttgagaaacaagtta |
2754700 |
T |
|
| Q |
201 |
catggaaaaggaatttaggtaaggatcatgtttttgttttagggaaaatttcttgggattttagaaggactagtgattctccttggggaactagattgtt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2754699 |
catggaaaaggaatttaggtaaggatcatgtttttgttttagggaaaatttcttgggattttagaaggactagtgattctccttggggaactagattgtt |
2754600 |
T |
|
| Q |
301 |
aaagctcgatgaatttcaaaatccaattaagttattgatcgaacgccagccgtggcatttgaacgacattggagttcctcat |
382 |
Q |
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| T |
2754599 |
aaagctcgatgaatttcaaaatccaattaagttattgatcgaacgccagccgtggcatttgaacgacattggagttcctcat |
2754518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 382
Target Start/End: Complemental strand, 2758860 - 2758479
Alignment:
| Q |
1 |
tcaatactcacttgaacaaatttttcattcaagggttttgaaacatccatgcagggtttataatgaaaatgatgcaaagctattctatgttccattctat |
100 |
Q |
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||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
2758860 |
tcaatactcacttgaacttatttttcattcaaaggttttgaagcatccatgcagggtttataatgaaaatgatgcaaagcttttctatgttccattctat |
2758761 |
T |
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| Q |
101 |
ggtggacttgatgtgttgagatggcatttcaaaaatgtttcaaatgatgttaaagatagtttaggtttggaattagttaagtggcttgagaaacaagtta |
200 |
Q |
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||||| ||||||||| |||||||||||||| | ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||| |
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| T |
2758760 |
ggtggtcttgatgtgctgagatggcatttccagaatgtttcaaatgatgttaaagacagtttaagtttggaattagttaagtggcttgagagacaagtta |
2758661 |
T |
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| Q |
201 |
catggaaaaggaatttaggtaaggatcatgtttttgttttagggaaaatttcttgggattttagaaggactagtgattctccttggggaactagattgtt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2758660 |
actggaaaaggaatttaggtaaggatcatgtttttgttttggggaaaatttcttgggattttagaaggactagtgattctccttggggaactagattgtt |
2758561 |
T |
|
| Q |
301 |
aaagctcgatgaatttcaaaatccaattaagttattgatcgaacgccagccgtggcatttgaacgacattggagttcctcat |
382 |
Q |
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| T |
2758560 |
agagctcgaaaaacttcaaaatccgattaaactattgatcgaacgccaaccgtggcatgtgaacgacattggaattcctcat |
2758479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 235 - 306
Target Start/End: Original strand, 18300061 - 18300132
Alignment:
| Q |
235 |
tgttttagggaaaatttcttgggattttagaaggactagtgattctccttggggaactagattgttaaagct |
306 |
Q |
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|||||| |||||||| || |||||||||||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
18300061 |
tgttttggggaaaatctcatgggattttagaaggactgacgattctccttggggaactagattgttagagct |
18300132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 235 - 324
Target Start/End: Complemental strand, 60855 - 60766
Alignment:
| Q |
235 |
tgttttagggaaaatttcttgggattttagaaggactagtgattctccttggggaactagattgttaaagctcgatgaatttcaaaatcc |
324 |
Q |
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|||||| |||||||| || ||||||||||||||||| ||||||||||||||||||||||||||| |||| || |||| |||||||| |
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| T |
60855 |
tgttttggggaaaatatcaagggattttagaaggactgacgattctccttggggaactagattgttagagcttgaaaaattgcaaaatcc |
60766 |
T |
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