View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13975_low_45 (Length: 383)
Name: NF13975_low_45
Description: NF13975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13975_low_45 |
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Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-171; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 371
Target Start/End: Complemental strand, 1575679 - 1575316
Alignment:
| Q |
1 |
catgatttccactcgttgcctttggtctcgtgctgcacaacacttccgttctcttataccaaacaataaatgaaatatactttatttctcacattctcta |
100 |
Q |
| |
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||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1575679 |
catgatttccactcgttacctttgatctcgtgctgtacaacacttccgttctcttataccaaacaataaatgaaatatactttatttctcacattctcta |
1575580 |
T |
|
| Q |
101 |
ttacctatttctccattctcaacttttcttccaaaccaaatacaccccctcttaaata----aaggaatttatgaatatttgtaagaaaggtataaatta |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
1575579 |
ttacctatttctccattctcaacttttcttccaaaccaaatacaccccctcttaaatagataaaggaatttatgaatatttgtaagaaaggtataaatta |
1575480 |
T |
|
| Q |
197 |
ctccaaaccatgttatgtgcatcctgaagttagttacctcgttttggagtaaatattttcataaataactattcaaattttgtattctcaatttattcat |
296 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1575479 |
ctccaaaccatgttatgtgcatcctgaagttagttacctcgttttggagtaaatattttcataaataactattcaaattttgtattctcaatttattcat |
1575380 |
T |
|
| Q |
297 |
cgtgtaacaatataaaaacacttnnnnnnncgcttatgattcatcgtgtaacattcttttacaatgatttattca |
371 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1575379 |
cgtgtaacaatataaaaa-----------acgcttatgattcatcgtgtaacattcttttacaatgatttattca |
1575316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 86 - 147
Target Start/End: Original strand, 27516304 - 27516365
Alignment:
| Q |
86 |
ttctcacattctctattacctatttctccattctcaacttttcttccaaaccaaatacaccc |
147 |
Q |
| |
|
|||||| | ||||| ||||||||||||| |||||||||| |||||||||||||| |||||| |
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|
| T |
27516304 |
ttctcatactctctcttacctatttctctcttctcaacttctcttccaaaccaaacacaccc |
27516365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 147
Target Start/End: Original strand, 4986993 - 4987054
Alignment:
| Q |
86 |
ttctcacattctctattacctatttctccattctcaacttttcttccaaaccaaatacaccc |
147 |
Q |
| |
|
|||||| | ||||| ||||||| ||||| |||||||||| |||||||||||||| |||||| |
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|
| T |
4986993 |
ttctcatactctctcttacctacttctctcttctcaacttctcttccaaaccaaacacaccc |
4987054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 94
Target Start/End: Original strand, 40687008 - 40687053
Alignment:
| Q |
49 |
ttctcttataccaaacaataaatgaaatatactttatttctcacat |
94 |
Q |
| |
|
|||||||||||||||||||| || |||| |||| |||||||||||| |
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|
| T |
40687008 |
ttctcttataccaaacaatacatcaaatctactatatttctcacat |
40687053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 86 - 147
Target Start/End: Complemental strand, 29801717 - 29801656
Alignment:
| Q |
86 |
ttctcacattctctattacctatttctccattctcaacttttcttccaaaccaaatacaccc |
147 |
Q |
| |
|
|||||| | ||||| ||||||| ||||| ||||||||||||||||||||||||| |||||| |
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|
| T |
29801717 |
ttctcatactctctcttacctacttctctcttctcaacttttcttccaaaccaaacacaccc |
29801656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 95
Target Start/End: Original strand, 26647764 - 26647810
Alignment:
| Q |
49 |
ttctcttataccaaacaataaatgaaatatactttatttctcacatt |
95 |
Q |
| |
|
||||||| ||||||||||| || ||||||||||||||||||||||| |
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|
| T |
26647764 |
ttctcttctaccaaacaatccatcaaatatactttatttctcacatt |
26647810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 95
Target Start/End: Original strand, 26919349 - 26919395
Alignment:
| Q |
49 |
ttctcttataccaaacaataaatgaaatatactttatttctcacatt |
95 |
Q |
| |
|
||||||| ||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
26919349 |
ttctcttctaccaaacaatccatcaaatatactttatttctcacatt |
26919395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 147
Target Start/End: Complemental strand, 38503573 - 38503512
Alignment:
| Q |
86 |
ttctcacattctctattacctatttctccattctcaacttttcttccaaaccaaatacaccc |
147 |
Q |
| |
|
|||||| | ||||| ||||||| ||||| |||||||||| |||||||||||||| |||||| |
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|
| T |
38503573 |
ttctcatactctctcttacctacttctctcttctcaacttctcttccaaaccaaacacaccc |
38503512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 94
Target Start/End: Complemental strand, 10365056 - 10365011
Alignment:
| Q |
49 |
ttctcttataccaaacaataaatgaaatatactttatttctcacat |
94 |
Q |
| |
|
||||||||||||||||||| || |||| ||||||||||||||||| |
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|
| T |
10365056 |
ttctcttataccaaacaatccatcaaatctactttatttctcacat |
10365011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 94
Target Start/End: Original strand, 40786342 - 40786386
Alignment:
| Q |
50 |
tctcttataccaaacaataaatgaaatatactttatttctcacat |
94 |
Q |
| |
|
||||||||||||||||||| || |||| |||| |||||||||||| |
|
|
| T |
40786342 |
tctcttataccaaacaatacatcaaatctactctatttctcacat |
40786386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 147
Target Start/End: Complemental strand, 22422781 - 22422737
Alignment:
| Q |
103 |
acctatttctccattctcaacttttcttccaaaccaaatacaccc |
147 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||||| |||||| |
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|
| T |
22422781 |
acctatttctctcttcacaacttttcttccaaaccaaacacaccc |
22422737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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