View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13975_low_47 (Length: 373)
Name: NF13975_low_47
Description: NF13975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13975_low_47 |
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Alignment Details
Target: chr2 (Bit Score: 144; Significance: 1e-75; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 13 - 164
Target Start/End: Original strand, 8344422 - 8344573
Alignment:
| Q |
13 |
tcatcatttgcatagctatggtggtggtattggcattaatagtggtggaggatacggcaatggtgcagttggtggttcaggtagtggtggagttggtgta |
112 |
Q |
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| T |
8344422 |
tcatcatttgcatagctatggtggtggtattggcattaatagtggtggaggatacggcaatggtgcagttggtggttcaggtagtggtggagttggtgta |
8344521 |
T |
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| Q |
113 |
ggacctggttctgggggtgtagttggaggtgaaaataaccccggaaatagtc |
164 |
Q |
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| T |
8344522 |
ggacctggttctgggggtgtagttggaggtggatataaccccggaaatagtc |
8344573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 241 - 355
Target Start/End: Original strand, 8344650 - 8344764
Alignment:
| Q |
241 |
tagttttggagggtctggtagtggaggaataggtggtggttatggtgatggaattggaggatctggcagtggaggtataggtggtgggaatggtggatct |
340 |
Q |
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| T |
8344650 |
tagttttggagggtctggtggtggaggaataggtggtggttatggtgatggaattggaggatctagcagtggaggtataggtggtgggaatggtggatct |
8344749 |
T |
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| Q |
341 |
ggtggtggagcaata |
355 |
Q |
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| T |
8344750 |
ggtggtggagcaata |
8344764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 271 - 336
Target Start/End: Original strand, 8344878 - 8344943
Alignment:
| Q |
271 |
aggtggtggttatggtgatggaattggaggatctggcagtggaggtataggtggtgggaatggtgg |
336 |
Q |
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| T |
8344878 |
aggtggtggttatagtaatggaaatggaggatctggcggcggaggtataggtggtggatatggtgg |
8344943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 254 - 309
Target Start/End: Original strand, 8344747 - 8344802
Alignment:
| Q |
254 |
tctggtagtggaggaataggtggtggttatggtgatggaattggaggatctggcag |
309 |
Q |
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| T |
8344747 |
tctggtggtggagcaataggtggtggttatggtggtggaaatggaggatttggcag |
8344802 |
T |
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