View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13975_low_50 (Length: 362)
Name: NF13975_low_50
Description: NF13975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13975_low_50 |
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| [»] scaffold0085 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 11 - 346
Target Start/End: Complemental strand, 45739019 - 45738683
Alignment:
| Q |
11 |
acatcatcatcgaaaattgagtgagagagttgcgtgaatcagaaatcagnnnnnnn-gcaactcatgggttgggcaatagctttacacggcggcgccggc |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45739019 |
acatcatcatcgaaaattgagtgagagagttgcgtgaatcagaaatcagaaaaaaaagcaactcatgggttgggcaatagctttacacggcggcgccggc |
45738920 |
T |
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| Q |
110 |
gacataccatattcacttccactggaacgccgtcaaccacgcgaagaagctctccgtcactgcctccaaatcggtgtcaaagctctcaaatccaacatgg |
209 |
Q |
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| T |
45738919 |
gacataccatattcacttccactggaacgccgtcaaccacgcgaagaagctctccgtcactgcctccaaatcggtgtcaaagctctcaaatccaacatgg |
45738820 |
T |
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| Q |
210 |
cacctctagacgtcgttgagcttgttgtatgtattcatcattcacactatttatcactttcaaagcacgaacactcttcaaattagacgcagacacatac |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45738819 |
cacctctagacgtcgttgagcttgttgtatgtattcatcattcacactatttatcactttcaaagcacgaacactcttcaaattagacgcagacacatac |
45738720 |
T |
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| Q |
310 |
aatgaaattgaattatgtgattttctcatattattat |
346 |
Q |
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| T |
45738719 |
aatgaaattgaattatatgattttctcatattattat |
45738683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 116 - 270
Target Start/End: Complemental strand, 45733488 - 45733334
Alignment:
| Q |
116 |
ccatattcacttccactggaacgccgtcaaccacgcgaagaagctctccgtcactgcctccaaatcggtgtcaaagctctcaaatccaacatggcacctc |
215 |
Q |
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|||| ||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||| |
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| T |
45733488 |
ccattttcacttccaccggaagcccgtcagccacgcgaagaagctctccgtcactgcctccaaattggtgtcaaagctctcaaatccaacatgtcccctc |
45733389 |
T |
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| Q |
216 |
tagacgtcgttgagcttgttgtatgtattcatcattcacactatttatcactttc |
270 |
Q |
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| T |
45733388 |
tagacgtcgttgagcttgttgtatgtattcatcactcacaatatttatcactttc |
45733334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0085 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0085
Description:
Target: scaffold0085; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 345
Target Start/End: Complemental strand, 26445 - 26401
Alignment:
| Q |
301 |
gacacatacaatgaaattgaattatgtgattttctcatattatta |
345 |
Q |
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| T |
26445 |
gacacatataacgacattgaattatgtgattttctcaaattatta |
26401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 345
Target Start/End: Original strand, 31236584 - 31236628
Alignment:
| Q |
301 |
gacacatacaatgaaattgaattatgtgattttctcatattatta |
345 |
Q |
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|||||||| ||| | |||||||||||||||||||||| ||||||| |
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| T |
31236584 |
gacacatataattacattgaattatgtgattttctcaaattatta |
31236628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 345
Target Start/End: Complemental strand, 22868094 - 22868050
Alignment:
| Q |
301 |
gacacatacaatgaaattgaattatgtgattttctcatattatta |
345 |
Q |
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| T |
22868094 |
gacacatataattacactgaattatgtgattttctcatattatta |
22868050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 345
Target Start/End: Complemental strand, 32308172 - 32308128
Alignment:
| Q |
301 |
gacacatacaatgaaattgaattatgtgattttctcatattatta |
345 |
Q |
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|||||||||||| | | |||||||||||||||||||| ||||||| |
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| T |
32308172 |
gacacatacaattacactgaattatgtgattttctcaaattatta |
32308128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 345
Target Start/End: Complemental strand, 9617486 - 9617442
Alignment:
| Q |
301 |
gacacatacaatgaaattgaattatgtgattttctcatattatta |
345 |
Q |
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|||||||| ||| | |||||||||||||||||||||| ||||||| |
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| T |
9617486 |
gacacatataattacattgaattatgtgattttctcaaattatta |
9617442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 345
Target Start/End: Original strand, 30866151 - 30866195
Alignment:
| Q |
301 |
gacacatacaatgaaattgaattatgtgattttctcatattatta |
345 |
Q |
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|||||||| ||| | |||||||||||||||||||||| ||||||| |
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| T |
30866151 |
gacacatataattacattgaattatgtgattttctcaaattatta |
30866195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 316 - 348
Target Start/End: Complemental strand, 9449506 - 9449474
Alignment:
| Q |
316 |
attgaattatgtgattttctcatattattattg |
348 |
Q |
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| T |
9449506 |
attgaattatgtgattttctcaaattattattg |
9449474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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