View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13975_low_51 (Length: 357)
Name: NF13975_low_51
Description: NF13975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13975_low_51 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 10 - 341
Target Start/End: Complemental strand, 44197281 - 44196940
Alignment:
| Q |
10 |
attatactgcgccaaataggtgagaacttcaatcataagcacaaagaaaattcatgaaaacaatcttatatactaccttattctcattgcatgatttcac |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44197281 |
attatactgcgccaaataggtgagaacttccatcataagcacaaagagaattcatgaaaacaatcttatatactaccttattctcattgcatgatttcac |
44197182 |
T |
|
| Q |
110 |
tcttttcgtctctctctctatatatat------------tttatcaaaaaagaagatggaagaagaagattgctctaaatattatcacaaaattattgta |
197 |
Q |
| |
|
||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44197181 |
tcttttcgtctctctctatatatatatatatatattgtttttgtcaaaaaagaagatggaagaagaagattgctctaaatattatcacaaaattattgta |
44197082 |
T |
|
| Q |
198 |
taaatatcattcttnnnnnnntgtaatagtagaaacgaaaaagtcaagaacacatatggattattggaataatgatgttttgcataagtatattctttgc |
297 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
44197081 |
taaatatcattcttaaaaaaatgtaatagtagaaacgaaaaagtcaagaacacat--gaattattggaataataatgttttgcataagtatattctttgc |
44196984 |
T |
|
| Q |
298 |
tagatactactaatttaaattaaaataattaatattcagtaatt |
341 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44196983 |
tagatactactaatttaaattaaaataattaatattcagtaatt |
44196940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 207
Target Start/End: Complemental strand, 20065650 - 20065621
Alignment:
| Q |
178 |
attatcacaaaattattgtataaatatcat |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
20065650 |
attatcacaaaattattgtataaatatcat |
20065621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University