View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13975_low_52 (Length: 355)
Name: NF13975_low_52
Description: NF13975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13975_low_52 |
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Alignment Details
Target: chr7 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 49005276 - 49004961
Alignment:
| Q |
1 |
gcacagacgctatacggatcacgatttgacatatctaaaatgatgcaaactacaaaaaatcactcttatgcaatcattaagtaatgnnnnnnnnnaagga |
100 |
Q |
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||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
49005276 |
gcacacacgttatacggatcacgatttgacatatctaaaatgatgcaaactacaaaaaatcactcttatgcaatcattaagtaatgtttttttt-aagga |
49005178 |
T |
|
| Q |
101 |
aatcattaagtaactttgataacgataataattcaaacatttaagaaatgacctcgtatat---gtattggnnnnnnnntttgttctcgcgtaaaagaaa |
197 |
Q |
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||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||| ||||||| ||| |
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| T |
49005177 |
aatcattaagtaattttgataacgataataattcaaacttttaagaaatgacctcgtatattaagtattggaaaaaaa-tttgttctcacgtaaaataaa |
49005079 |
T |
|
| Q |
198 |
ggtctaaaatgagtttataaagagtgnnnnnnntcagcttacgaaattgattttgtaagatgagttaaatcaatatgcatttcttatattaaattaaagt |
297 |
Q |
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|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||| |||||||| ||||||||||| ||||| |
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| T |
49005078 |
ggtctaaaatgagtttataaagagtgaaaaaattcagcttaggaaattgattttgtaagatgagttaaaccaacatgcatttgttatattaaatcaaagt |
49004979 |
T |
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| Q |
298 |
tttttaattgtgccatct |
315 |
Q |
| |
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||||| |||||||||||| |
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| T |
49004978 |
tttttgattgtgccatct |
49004961 |
T |
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