View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13975_low_53 (Length: 348)
Name: NF13975_low_53
Description: NF13975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13975_low_53 |
 | |
|
| [»] scaffold0036 (2 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 13 - 328
Target Start/End: Complemental strand, 26474719 - 26474404
Alignment:
| Q |
13 |
aatatccataagacaaatttcatagtagttaacaagtggaatagtagcacaaatcatagttgtatgttaggagtttagactcgttttttgtattgagttt |
112 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
26474719 |
aatatccataaaacaaatttcatagtagttaacaagtggaatagtagcgcaaatcatagttgtatgttaggagtttagactagttttttgtattgagttt |
26474620 |
T |
|
| Q |
113 |
ttgtcatttgattaaatctttacataaatttgttcaaatttccatagtcctctcataattactatgcatgtctattttgtgtaaaaaattgattttagaa |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26474619 |
ttgtcatttgattaaatctttacataaatttgttcaaatttccatagtcctttcataattactatgcatgtctattttgtgtaaaaaattgattttagaa |
26474520 |
T |
|
| Q |
213 |
actaattatctcacaagttgagtagaatcacaagaaatgtcaaaacatttccacagttttaactttgcactctcaattttggattcaactcaatatatcc |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26474519 |
actaattatctcacaagttgagtagaatcacaagaaatgtcaaaacatttccacagttttaactttgcactctcaattttggattcaactcaatatatcc |
26474420 |
T |
|
| Q |
313 |
cttctatcaaaacatt |
328 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
26474419 |
cttctatcaaaacatt |
26474404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 64486 - 64538
Alignment:
| Q |
13 |
aatatccataagacaaatttcatagtagttaacaagtggaatagtagcacaaa |
65 |
Q |
| |
|
|||||||| ||||||||| |||| |||||||||| |||||| ||||||||||| |
|
|
| T |
64486 |
aatatccagaagacaaatctcatggtagttaacacgtggaacagtagcacaaa |
64538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 69627 - 69679
Alignment:
| Q |
13 |
aatatccataagacaaatttcatagtagttaacaagtggaatagtagcacaaa |
65 |
Q |
| |
|
|||||||| ||||||||| |||| |||||||||| |||||| ||||||||||| |
|
|
| T |
69627 |
aatatccagaagacaaatctcatggtagttaacacgtggaacagtagcacaaa |
69679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University