View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13975_low_54 (Length: 346)
Name: NF13975_low_54
Description: NF13975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13975_low_54 |
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Alignment Details
Target: chr3 (Bit Score: 319; Significance: 1e-180; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 44660856 - 44661182
Alignment:
| Q |
1 |
cgtagtcactaatacattaatttacttagttttttcatgtttactccctctacctctataaatagatacgagtgccaaatacaagtttgttcattaacag |
100 |
Q |
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| T |
44660856 |
cgtagtcactaatacattaatttacttagttttttcatgtttactccctctacctctataaatagatacgagtgccaaatacaagtttgttcattaacag |
44660955 |
T |
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| Q |
101 |
gatagtaaattcaggtgaagattgtagcaagcagtaaacatgaacaagacacgctttggatttttcttcattttgcttattctccttgcttctcgtaagt |
200 |
Q |
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| T |
44660956 |
gatagtaaattcaggtgaagattgtagcaagcagtaatcatgaacaagacacgctttggatttttcttcattttgcttattctccttgcttctcgtaagt |
44661055 |
T |
|
| Q |
201 |
cttttaagtggcatatacatatgtagttaacgaaatctattgtttttagtaaaatatgtttatattaatcatattaatgacctattgataaatcattgca |
300 |
Q |
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| T |
44661056 |
cttttaagtggcatatacatatgtagttaacgaaatctattgtttttagtaaaatatgtttatattaatcatattaatgagctattgataaatcattgca |
44661155 |
T |
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| Q |
301 |
gagatgatggtgcaaactgaaggaaga |
327 |
Q |
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| T |
44661156 |
gagatgatggtgcaaactgaaggaaga |
44661182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 134 - 203
Target Start/End: Complemental strand, 44650857 - 44650788
Alignment:
| Q |
134 |
gtaaacatgaacaagacacgctttggatttttcttcattttgcttattctccttgcttctcgtaagtctt |
203 |
Q |
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| T |
44650857 |
gtaatcatgaacaagacacgctttggggttttattcattttgtttattctccttgcttctagtaagtctt |
44650788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 203
Target Start/End: Original strand, 44653851 - 44653915
Alignment:
| Q |
139 |
catgaacaagacacgctttggatttttcttcattttgcttattctccttgcttctcgtaagtctt |
203 |
Q |
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||||||||| | ||||||||||||||||||||| | |||||||| ||| ||| | ||||||||| |
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| T |
44653851 |
catgaacaaagctcgctttggatttttcttcattctacttattcttcttacttttggtaagtctt |
44653915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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