View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13975_low_56 (Length: 343)
Name: NF13975_low_56
Description: NF13975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13975_low_56 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 343
Target Start/End: Complemental strand, 39088058 - 39087716
Alignment:
| Q |
1 |
caagataaggctgatgacgtgatcatcaaatcaactgggaatgttgacaataggaaaaatgaagcagaacataaagctgatgatatggtcattgaagaag |
100 |
Q |
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| T |
39088058 |
caagataaggctgatgacgtgatcatcaaatcaactgggaatgttgacaataggaaaaatgaagcagaacataaagctgatgatatggtcattgaagaag |
39087959 |
T |
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| Q |
101 |
ttacggcagatattaggaaaaatgaagcagaggagaaggctgctgacatgatcattgcgacaactgggactgcaaatattggagcagctttattagataa |
200 |
Q |
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| T |
39087958 |
ttacggcagatattaggaaaaatgaagcagaggagaaggctgctgacatgatcattgcgacaactgggactgcaaatattggagcagctctattagataa |
39087859 |
T |
|
| Q |
201 |
tagaaaaaccgaagacacagaaaataaactgcttagtggtttaggcagtattaattctggagccgaagagaaggcgtcaaaacaaccagctaatccagat |
300 |
Q |
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| T |
39087858 |
tagaaaaaccgaagacacagaaaataaactgcttagtggtttaggcagtattaattctggagccgaagagaaggcgtcgaaacaaccagctaatccagat |
39087759 |
T |
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| Q |
301 |
ggtaaacaaagtgaagcagaagagaaggcagataaaccacaat |
343 |
Q |
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| T |
39087758 |
ggtaaacaaagtgaagcagaagagaaggcagataaaccacaat |
39087716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 272
Target Start/End: Complemental strand, 18293278 - 18293181
Alignment:
| Q |
175 |
aatattggagcagctttattagataatagaaaaaccgaagacacagaaaataaactgcttagtggtttaggcagtattaattctggagccgaagagaa |
272 |
Q |
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| T |
18293278 |
aatattggagttgctctatcagataatagaaaaactgaagtctcagtagataaacaccttaatgtattaggcagtgttaatttcggagccgaagagaa |
18293181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 272
Target Start/End: Original strand, 4849705 - 4849802
Alignment:
| Q |
175 |
aatattggagcagctttattagataatagaaaaaccgaagacacagaaaataaactgcttagtggtttaggcagtattaattctggagccgaagagaa |
272 |
Q |
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|||||||||| ||| ||| ||||||||||||||| |||| | ||| | |||||| |||| || ||||||||| |||||| |||||||||||||| |
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| T |
4849705 |
aatattggagttgctctatcagataatagaaaaactgaagtctcagtagataaacaccttaatgtattaggcagtgttaatttcggagccgaagagaa |
4849802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 272
Target Start/End: Complemental strand, 26443480 - 26443383
Alignment:
| Q |
175 |
aatattggagcagctttattagataatagaaaaaccgaagacacagaaaataaactgcttagtggtttaggcagtattaattctggagccgaagagaa |
272 |
Q |
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|||||||||| ||| ||| ||||||||||||||| |||| | ||| | |||||| |||| || ||||||||| |||||| |||||||||||||| |
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| T |
26443480 |
aatattggagttgctctatcagataatagaaaaactgaagtctcagtagataaacaccttaatgtattaggcagtgttaatttcggagccgaagagaa |
26443383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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