View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13975_low_57 (Length: 337)
Name: NF13975_low_57
Description: NF13975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13975_low_57 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 14 - 233
Target Start/End: Complemental strand, 24237956 - 24237737
Alignment:
| Q |
14 |
cacaggggagtattttggagacaaaatgcatggatttggagtttaccattttgcgaatggacactgttatgaaggagcatggcatgaaggtcgtcgacaa |
113 |
Q |
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| T |
24237956 |
cacaggggagtatttcggagacaaaatgcatggatttggagtttaccattttgcgaatggacactgttatgaaggagcatggcatgaaggtcgtcgacaa |
24237857 |
T |
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| Q |
114 |
ggttatggtgtttatacatttcgaaatggagaccgaagatgtggtgaatgggacagtggtgacctcaagcactctctaccaccacaaactcaggctgtcc |
213 |
Q |
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| T |
24237856 |
ggttatggtgtttatacatttcgaaatggagaccgaagatgtggtgaatgggacagtggtgacctcaagcactctctaccaccacaaactcaggctgtcc |
24237757 |
T |
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| Q |
214 |
ttacgtcagctcaggtattt |
233 |
Q |
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|||| ||||||||||||||| |
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| T |
24237756 |
ttacatcagctcaggtattt |
24237737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 232 - 337
Target Start/End: Complemental strand, 24237690 - 24237585
Alignment:
| Q |
232 |
ttcaaaaaatgactatttaacgaattaatatctaaattggtccttcttaaaaaacagtagacctaattggtctatgccgtctacaagtttatgagactta |
331 |
Q |
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| T |
24237690 |
ttcaaaaaatgactatttaatgaattaatatctaaattggtccttcttaaaaaacagtagacctaattggtctatgccgtctacaagtttatgagactta |
24237591 |
T |
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| Q |
332 |
cgtgtc |
337 |
Q |
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|||||| |
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| T |
24237590 |
cgtgtc |
24237585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 16 - 166
Target Start/End: Complemental strand, 32693171 - 32693021
Alignment:
| Q |
16 |
caggggagtattttggagacaaaatgcatggatttggagtttaccattttgcgaatggacactgttatgaaggagcatggcatgaaggtcgtcgacaagg |
115 |
Q |
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|||| |||||||||||||||||||| |||||||||||||| ||||||||||| |||||||| |||||||||||||| |||||||| |||||| ||||||| |
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| T |
32693171 |
caggagagtattttggagacaaaattcatggatttggagtgtaccattttgctaatggacattgttatgaaggagcgtggcatgagggtcgtagacaagg |
32693072 |
T |
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| Q |
116 |
ttatggtgtttatacatttcgaaatggagaccgaagatgtggtgaatggga |
166 |
Q |
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| T |
32693071 |
tattggctcgtatacctttcgaaatggtgatcgaagatgtggtgaatggga |
32693021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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