View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13975_low_59 (Length: 325)

Name: NF13975_low_59
Description: NF13975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13975_low_59
NF13975_low_59
[»] chr8 (6 HSPs)
chr8 (19-318)||(23555886-23556182)
chr8 (96-134)||(42747271-42747309)
chr8 (96-132)||(27420370-27420406)
chr8 (100-129)||(11961688-11961717)
chr8 (99-132)||(23636614-23636647)
chr8 (96-133)||(43978449-43978486)
[»] chr5 (8 HSPs)
chr5 (192-313)||(28420171-28420292)
chr5 (185-320)||(22689044-22689179)
chr5 (96-132)||(22099132-22099168)
chr5 (96-132)||(9064568-9064604)
chr5 (96-132)||(31293374-31293410)
chr5 (100-134)||(11879126-11879160)
chr5 (100-148)||(20143403-20143451)
chr5 (96-132)||(20428437-20428473)
[»] scaffold0090 (1 HSPs)
scaffold0090 (205-318)||(8009-8122)
[»] scaffold1951 (1 HSPs)
scaffold1951 (96-132)||(482-518)
[»] chr7 (16 HSPs)
chr7 (96-132)||(7282563-7282599)
chr7 (96-132)||(10427830-10427866)
chr7 (96-132)||(44521505-44521541)
chr7 (96-134)||(40752472-40752510)
chr7 (97-134)||(9600231-9600268)
chr7 (97-134)||(9827802-9827839)
chr7 (96-132)||(9604269-9604305)
chr7 (96-132)||(9831840-9831876)
chr7 (97-165)||(45023743-45023811)
chr7 (97-143)||(3022240-3022286)
chr7 (94-132)||(13851668-13851706)
chr7 (96-130)||(25011694-25011728)
chr7 (100-129)||(924046-924075)
chr7 (100-129)||(3940966-3940995)
chr7 (100-132)||(25021242-25021274)
chr7 (96-132)||(31430389-31430425)
[»] chr6 (9 HSPs)
chr6 (97-157)||(26585123-26585183)
chr6 (97-132)||(12336174-12336209)
chr6 (96-149)||(25739953-25740006)
chr6 (96-132)||(3024819-3024855)
chr6 (96-146)||(3930621-3930671)
chr6 (95-132)||(8460779-8460816)
chr6 (97-150)||(17529563-17529616)
chr6 (97-157)||(9830782-9830842)
chr6 (96-132)||(34316093-34316129)
[»] chr4 (12 HSPs)
chr4 (96-132)||(8683984-8684020)
chr4 (96-132)||(22197656-22197692)
chr4 (96-132)||(37113208-37113244)
chr4 (99-132)||(6453535-6453568)
chr4 (96-132)||(10359056-10359092)
chr4 (103-146)||(35259339-35259382)
chr4 (95-129)||(55147800-55147834)
chr4 (100-129)||(28943818-28943847)
chr4 (96-132)||(5321312-5321348)
chr4 (100-132)||(10153413-10153445)
chr4 (100-132)||(16403118-16403150)
chr4 (96-132)||(34015209-34015245)
[»] chr3 (12 HSPs)
chr3 (96-132)||(30187271-30187307)
chr3 (96-166)||(37268884-37268954)
chr3 (96-130)||(55339436-55339470)
chr3 (96-132)||(14092719-14092755)
chr3 (96-132)||(17794534-17794570)
chr3 (96-132)||(19102974-19103010)
chr3 (96-143)||(21095380-21095427)
chr3 (100-129)||(22757354-22757383)
chr3 (96-133)||(28033565-28033601)
chr3 (97-137)||(10947648-10947688)
chr3 (96-132)||(32649232-32649268)
chr3 (96-132)||(38472790-38472826)
[»] chr2 (10 HSPs)
chr2 (96-132)||(16238720-16238756)
chr2 (96-132)||(26311151-26311187)
chr2 (96-143)||(11002389-11002436)
chr2 (96-132)||(25599227-25599263)
chr2 (96-130)||(959865-959899)
chr2 (96-138)||(6570084-6570126)
chr2 (96-126)||(22670044-22670074)
chr2 (104-132)||(33033649-33033677)
chr2 (96-132)||(35499569-35499605)
chr2 (96-132)||(45066046-45066082)
[»] chr1 (4 HSPs)
chr1 (96-132)||(27895499-27895535)
chr1 (100-132)||(33799150-33799182)
chr1 (100-129)||(17541506-17541535)
chr1 (96-132)||(45836112-45836148)
[»] scaffold0385 (1 HSPs)
scaffold0385 (96-132)||(2803-2839)
[»] scaffold0015 (1 HSPs)
scaffold0015 (99-131)||(4855-4887)


Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 19 - 318
Target Start/End: Complemental strand, 23556182 - 23555886
Alignment:
Q  19 tatagttccctccttccataatctccatgcctacaacaaattaaaatgtgttattatctactagtttgatgtcccatgtgattctcttttgcacaccttg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  23556182 tatagttccctccttccataatctccatgcctacaacaaattaaaatgtgttattatctactagtttgatgtcccatgtgattctctattgcacaccttg 23556083  T
Q  119 tgcgagatgaatcatcagtggtaatctaattctctttttcgcttgttcagnnnnnnnnnttaaatcttttttggtactcacatgtgcaataagattgtga 218  Q
    |||||||||||||||||||||||||||| |||||||||| |||| ||||            ||| ||||||||||||||||||| |||||||||||||||    
T  23556082 tgcgagatgaatcatcagtggtaatctagttctctttttggcttattcaaaaaaaaaa---aaaacttttttggtactcacatgcgcaataagattgtga 23555986  T
Q  219 tcttgttgattgtaggtacgtgtcctatttttcagtccacttataagttcgaggactaatacgccaaaactaaatacatctgatttaatagagaataatc 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23555985 tcttgttgattgtaggtacgtgtcctatttttcagtccacttataagttcgaggactaatacgccaaaactaaatacatctgatttaatagagaataatc 23555886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 96 - 134
Target Start/End: Original strand, 42747271 - 42747309
Alignment:
Q  96 gtgattctcttttgcacaccttgtgcgagatgaatcatc 134  Q
    |||||||||||||||||||||||||||||||||||||||    
T  42747271 gtgattctcttttgcacaccttgtgcgagatgaatcatc 42747309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 96 - 132
Target Start/End: Complemental strand, 27420406 - 27420370
Alignment:
Q  96 gtgattctcttttgcacaccttgtgcgagatgaatca 132  Q
    |||||||||||||||||||||||||||||||||||||    
T  27420406 gtgattctcttttgcacaccttgtgcgagatgaatca 27420370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 129
Target Start/End: Complemental strand, 11961717 - 11961688
Alignment:
Q  100 ttctcttttgcacaccttgtgcgagatgaa 129  Q
    ||||||||||||||||||||||||||||||    
T  11961717 ttctcttttgcacaccttgtgcgagatgaa 11961688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 132
Target Start/End: Complemental strand, 23636647 - 23636614
Alignment:
Q  99 attctcttttgcacaccttgtgcgagatgaatca 132  Q
    ||||||||||||||||||||| ||||||||||||    
T  23636647 attctcttttgcacaccttgtacgagatgaatca 23636614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 133
Target Start/End: Original strand, 43978449 - 43978486
Alignment:
Q  96 gtgattctcttttgcacaccttgtgcgagatgaatcat 133  Q
    |||||||||| ||||| |||||||||||||||||||||    
T  43978449 gtgattctctattgcataccttgtgcgagatgaatcat 43978486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 192 - 313
Target Start/End: Complemental strand, 28420292 - 28420171
Alignment:
Q  192 gtactcacatgtgcaataagattgtgatcttgttgattgtaggtacgtgtcctatttttcagtccacttataagttcgaggactaatacgccaaaactaa 291  Q
    |||||||||||   ||||||||||||||| |||| || ||||||| |||| || ||||||  ||| |||||   ||| || | |||||||||||| ||||    
T  28420292 gtactcacatgccaaataagattgtgatcatgttcatggtaggtaagtgttctgtttttctttccgcttattgtttcaagcaataatacgccaaagctaa 28420193  T
Q  292 atacatctgatttaatagagaa 313  Q
    ||||||||||||||||||||||    
T  28420192 atacatctgatttaatagagaa 28420171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 185 - 320
Target Start/End: Original strand, 22689044 - 22689179
Alignment:
Q  185 ttttttggtactcacatgtgcaataagattgtgatcttgttgattgtaggtacgtgtcctatttttcagtccacttataagttcgaggactaatacgcca 284  Q
    |||| ||||||| |||||   ||||||||||||||| |||| ||  |||||| ||| ||||||| |   ||| ||||| | |||||| | ||  ||||||    
T  22689044 ttttgtggtacttacatgccaaataagattgtgatcatgttcatgataggtaagtgccctatttcttcttccgcttatgatttcgagcaataggacgcca 22689143  T
Q  285 aaactaaatacatctgatttaatagagaataatcta 320  Q
    || ||||||||||||||||| |||||||||||||||    
T  22689144 aagctaaatacatctgattttatagagaataatcta 22689179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 96 - 132
Target Start/End: Original strand, 22099132 - 22099168
Alignment:
Q  96 gtgattctcttttgcacaccttgtgcgagatgaatca 132  Q
    |||||||||||||||||||||||||||||||||||||    
T  22099132 gtgattctcttttgcacaccttgtgcgagatgaatca 22099168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 132
Target Start/End: Complemental strand, 9064604 - 9064568
Alignment:
Q  96 gtgattctcttttgcacaccttgtgcgagatgaatca 132  Q
    ||||||||||||||||||| |||||||||||||||||    
T  9064604 gtgattctcttttgcacactttgtgcgagatgaatca 9064568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 132
Target Start/End: Complemental strand, 31293410 - 31293374
Alignment:
Q  96 gtgattctcttttgcacaccttgtgcgagatgaatca 132  Q
    ||||||||||||||||||| |||||||||||||||||    
T  31293410 gtgattctcttttgcacacgttgtgcgagatgaatca 31293374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 134
Target Start/End: Complemental strand, 11879160 - 11879126
Alignment:
Q  100 ttctcttttgcacaccttgtgcgagatgaatcatc 134  Q
    |||||||||||||||||| ||||||||||||||||    
T  11879160 ttctcttttgcacaccttatgcgagatgaatcatc 11879126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 148
Target Start/End: Complemental strand, 20143451 - 20143403
Alignment:
Q  100 ttctcttttgcacaccttgtgcgagatgaatcatcagtggtaatctaat 148  Q
    |||||||||||||| ||| ||||||||||||||||  |||| |||||||    
T  20143451 ttctcttttgcacatcttatgcgagatgaatcatctttggtgatctaat 20143403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 132
Target Start/End: Original strand, 20428437 - 20428473
Alignment:
Q  96 gtgattctcttttgcacaccttgtgcgagatgaatca 132  Q
    |||||| |||||||||||||||||||| |||||||||    
T  20428437 gtgattatcttttgcacaccttgtgcgggatgaatca 20428473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 318
Target Start/End: Original strand, 8009 - 8122
Alignment:
Q  205 caataagattgtgatcttgttgattgtaggtacgtgtcctatttttcagtccacttataagttcgaggactaatacgccaaaactaaatacatctgattt 304  Q
    |||||||||| ||||||| || || |||| || |||  |||||||||  |||||| |||| ||| |  | |||||||||||| |||||||||||||||||    
T  8009 caataagattatgatcttcttcatggtagctaagtgctctatttttctttccactgataatttctaataataatacgccaaagctaaatacatctgattt 8108  T
Q  305 aatagagaataatc 318  Q
     ||||| |||||||    
T  8109 gatagaaaataatc 8122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1951 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold1951
Description:

Target: scaffold1951; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 96 - 132
Target Start/End: Complemental strand, 518 - 482
Alignment:
Q  96 gtgattctcttttgcacaccttgtgcgagatgaatca 132  Q
    |||||||||||||||||||||||||||||||||||||    
T  518 gtgattctcttttgcacaccttgtgcgagatgaatca 482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 96 - 132
Target Start/End: Complemental strand, 7282599 - 7282563
Alignment:
Q  96 gtgattctcttttgcacaccttgtgcgagatgaatca 132  Q
    |||||||||||||||||||||||||||||||||||||    
T  7282599 gtgattctcttttgcacaccttgtgcgagatgaatca 7282563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 96 - 132
Target Start/End: Original strand, 10427830 - 10427866
Alignment:
Q  96 gtgattctcttttgcacaccttgtgcgagatgaatca 132  Q
    |||||||||||||||||||||||||||||||||||||    
T  10427830 gtgattctcttttgcacaccttgtgcgagatgaatca 10427866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 96 - 132
Target Start/End: Complemental strand, 44521541 - 44521505
Alignment:
Q  96 gtgattctcttttgcacaccttgtgcgagatgaatca 132  Q
    |||||||||||||||||||||||||||||||||||||    
T  44521541 gtgattctcttttgcacaccttgtgcgagatgaatca 44521505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 134
Target Start/End: Original strand, 40752472 - 40752510
Alignment:
Q  96 gtgattctcttttgcacaccttgtgcgagatgaatcatc 134  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  40752472 gtgattctcttttacacaccttgtgcgagatgaatcatc 40752510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 97 - 134
Target Start/End: Complemental strand, 9600268 - 9600231
Alignment:
Q  97 tgattctcttttgcacaccttgtgcgagatgaatcatc 134  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  9600268 tgattctcttttgcacaccttgtacgagatgaatcatc 9600231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 97 - 134
Target Start/End: Complemental strand, 9827839 - 9827802
Alignment:
Q  97 tgattctcttttgcacaccttgtgcgagatgaatcatc 134  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  9827839 tgattctcttttgcacaccttgtacgagatgaatcatc 9827802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 132
Target Start/End: Complemental strand, 9604305 - 9604269
Alignment:
Q  96 gtgattctcttttgcacaccttgtgcgagatgaatca 132  Q
    |||||| ||||||||||||||||||||||||||||||    
T  9604305 gtgattttcttttgcacaccttgtgcgagatgaatca 9604269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 132
Target Start/End: Complemental strand, 9831876 - 9831840
Alignment:
Q  96 gtgattctcttttgcacaccttgtgcgagatgaatca 132  Q
    |||||| ||||||||||||||||||||||||||||||    
T  9831876 gtgattttcttttgcacaccttgtgcgagatgaatca 9831840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 165
Target Start/End: Original strand, 45023743 - 45023811
Alignment:
Q  97 tgattctcttttgcacaccttgtgcgagatgaatcatcagtggtaatctaattctctttttcgcttgtt 165  Q
    ||||||||||||||||| |||||||||||||||| ||  |||||||| ||| |||| || | |||||||    
T  45023743 tgattctcttttgcacatcttgtgcgagatgaattatatgtggtaatttaaatctcattctagcttgtt 45023811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 143
Target Start/End: Original strand, 3022240 - 3022286
Alignment:
Q  97 tgattctcttttgcacaccttgtgcgagatgaatcatcagtggtaat 143  Q
    ||||| ||||||||||||||||| |||||||||| | ||||||||||    
T  3022240 tgattatcttttgcacaccttgtacgagatgaattaccagtggtaat 3022286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 132
Target Start/End: Original strand, 13851668 - 13851706
Alignment:
Q  94 atgtgattctcttttgcacaccttgtgcgagatgaatca 132  Q
    ||||| |||||||||||||||||||| ||||||||||||    
T  13851668 atgtggttctcttttgcacaccttgtacgagatgaatca 13851706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 130
Target Start/End: Original strand, 25011694 - 25011728
Alignment:
Q  96 gtgattctcttttgcacaccttgtgcgagatgaat 130  Q
    ||||||||||||||||| |||||||||||||||||    
T  25011694 gtgattctcttttgcacgccttgtgcgagatgaat 25011728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 129
Target Start/End: Original strand, 924046 - 924075
Alignment:
Q  100 ttctcttttgcacaccttgtgcgagatgaa 129  Q
    ||||||||||||||||||||||||||||||    
T  924046 ttctcttttgcacaccttgtgcgagatgaa 924075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 129
Target Start/End: Complemental strand, 3940995 - 3940966
Alignment:
Q  100 ttctcttttgcacaccttgtgcgagatgaa 129  Q
    ||||||||||||||||||||||||||||||    
T  3940995 ttctcttttgcacaccttgtgcgagatgaa 3940966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 132
Target Start/End: Complemental strand, 25021274 - 25021242
Alignment:
Q  100 ttctcttttgcacaccttgtgcgagatgaatca 132  Q
    ||||||||||||| |||||||||||||||||||    
T  25021274 ttctcttttgcacgccttgtgcgagatgaatca 25021242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 132
Target Start/End: Original strand, 31430389 - 31430425
Alignment:
Q  96 gtgattctcttttgcacaccttgtgcgagatgaatca 132  Q
    |||||||||||||||| ||| ||||||||||||||||    
T  31430389 gtgattctcttttgcataccgtgtgcgagatgaatca 31430425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 97 - 157
Target Start/End: Original strand, 26585123 - 26585183
Alignment:
Q  97 tgattctcttttgcacaccttgtgcgagatgaatcatcagtggtaatctaattctcttttt 157  Q
    ||||||||||||||| | ||||||||||||||||||||| ||||||| ||| |||| ||||    
T  26585123 tgattctcttttgcatatcttgtgcgagatgaatcatcaatggtaatttaaatctcatttt 26585183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 132
Target Start/End: Original strand, 12336174 - 12336209
Alignment:
Q  97 tgattctcttttgcacaccttgtgcgagatgaatca 132  Q
    ||||||||||||||||||||||||||||||||||||    
T  12336174 tgattctcttttgcacaccttgtgcgagatgaatca 12336209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 96 - 149
Target Start/End: Complemental strand, 25740006 - 25739953
Alignment:
Q  96 gtgattctcttttgcacaccttgtgcgagatgaatcatcagtggtaatctaatt 149  Q
    |||||||||||||||||  |||||||||||||||||| | |||||||| |||||    
T  25740006 gtgattctcttttgcacgtcttgtgcgagatgaatcaccggtggtaatttaatt 25739953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 132
Target Start/End: Complemental strand, 3024855 - 3024819
Alignment:
Q  96 gtgattctcttttgcacaccttgtgcgagatgaatca 132  Q
    |||||||||||||||||||||| ||||||||||||||    
T  3024855 gtgattctcttttgcacaccttatgcgagatgaatca 3024819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 146
Target Start/End: Complemental strand, 3930671 - 3930621
Alignment:
Q  96 gtgattctcttttgcacaccttgtgcgagatgaatcatcagtggtaatcta 146  Q
    |||||||||||||||||||||||| || ||||||||| ||  |||||||||    
T  3930671 gtgattctcttttgcacaccttgtacgggatgaatcaccataggtaatcta 3930621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 132
Target Start/End: Original strand, 8460779 - 8460816
Alignment:
Q  95 tgtgattctcttttgcacaccttgtgcgagatgaatca 132  Q
    |||| ||||||||||||| |||||||||||||||||||    
T  8460779 tgtggttctcttttgcacgccttgtgcgagatgaatca 8460816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 150
Target Start/End: Original strand, 17529563 - 17529616
Alignment:
Q  97 tgattctcttttgcacaccttgtgcgagatgaatcatcagtggtaatctaattc 150  Q
    |||||||| |||| || |||||||| |||||||||||  |||||||||||||||    
T  17529563 tgattctcgtttgtacgccttgtgcaagatgaatcatttgtggtaatctaattc 17529616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 157
Target Start/End: Original strand, 9830782 - 9830842
Alignment:
Q  97 tgattctcttttgcacaccttgtgcgagatgaatcatcagtggtaatctaattctcttttt 157  Q
    ||||||||||||||||| ||| | ||||||||||| || |||||||| ||| |||| ||||    
T  9830782 tgattctcttttgcacatcttatacgagatgaatcgtccgtggtaatttaaatctcatttt 9830842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 132
Target Start/End: Complemental strand, 34316129 - 34316093
Alignment:
Q  96 gtgattctcttttgcacaccttgtgcgagatgaatca 132  Q
    |||| ||||||||||||||||| ||||||||||||||    
T  34316129 gtgaatctcttttgcacaccttttgcgagatgaatca 34316093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 96 - 132
Target Start/End: Complemental strand, 8684020 - 8683984
Alignment:
Q  96 gtgattctcttttgcacaccttgtgcgagatgaatca 132  Q
    |||||||||||||||||||||||||||||||||||||    
T  8684020 gtgattctcttttgcacaccttgtgcgagatgaatca 8683984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 96 - 132
Target Start/End: Original strand, 22197656 - 22197692
Alignment:
Q  96 gtgattctcttttgcacaccttgtgcgagatgaatca 132  Q
    |||||||||||||||||||||||||||||||||||||    
T  22197656 gtgattctcttttgcacaccttgtgcgagatgaatca 22197692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 96 - 132
Target Start/End: Original strand, 37113208 - 37113244
Alignment:
Q  96 gtgattctcttttgcacaccttgtgcgagatgaatca 132  Q
    |||||||||||||||||||||||||||||||||||||    
T  37113208 gtgattctcttttgcacaccttgtgcgagatgaatca 37113244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 99 - 132
Target Start/End: Original strand, 6453535 - 6453568
Alignment:
Q  99 attctcttttgcacaccttgtgcgagatgaatca 132  Q
    ||||||||||||||||||||||||||||||||||    
T  6453535 attctcttttgcacaccttgtgcgagatgaatca 6453568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 132
Target Start/End: Original strand, 10359056 - 10359092
Alignment:
Q  96 gtgattctcttttgcacaccttgtgcgagatgaatca 132  Q
    |||||||||||||||||||||||||| ||||||||||    
T  10359056 gtgattctcttttgcacaccttgtgctagatgaatca 10359092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 103 - 146
Target Start/End: Original strand, 35259339 - 35259382
Alignment:
Q  103 tcttttgcacaccttgtgcgagatgaatcatcagtggtaatcta 146  Q
    ||||||||||||||||| |||||||||| ||| |||||||||||    
T  35259339 tcttttgcacaccttgtacgagatgaattatcggtggtaatcta 35259382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 129
Target Start/End: Original strand, 55147800 - 55147834
Alignment:
Q  95 tgtgattctcttttgcacaccttgtgcgagatgaa 129  Q
    |||| ||||||||||||||||||||||||||||||    
T  55147800 tgtgtttctcttttgcacaccttgtgcgagatgaa 55147834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 129
Target Start/End: Original strand, 28943818 - 28943847
Alignment:
Q  100 ttctcttttgcacaccttgtgcgagatgaa 129  Q
    ||||||||||||||||||||||||||||||    
T  28943818 ttctcttttgcacaccttgtgcgagatgaa 28943847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 132
Target Start/End: Original strand, 5321312 - 5321348
Alignment:
Q  96 gtgattctcttttgcacaccttgtgcgagatgaatca 132  Q
    |||||| |||||||||||||||||||| |||||||||    
T  5321312 gtgattatcttttgcacaccttgtgcgggatgaatca 5321348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 132
Target Start/End: Original strand, 10153413 - 10153445
Alignment:
Q  100 ttctcttttgcacaccttgtgcgagatgaatca 132  Q
    |||||||||||||||||| ||||||||||||||    
T  10153413 ttctcttttgcacaccttatgcgagatgaatca 10153445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 132
Target Start/End: Complemental strand, 16403150 - 16403118
Alignment:
Q  100 ttctcttttgcacaccttgtgcgagatgaatca 132  Q
    ||||||||||||||||||||| |||||||||||    
T  16403150 ttctcttttgcacaccttgtgtgagatgaatca 16403118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 132
Target Start/End: Original strand, 34015209 - 34015245
Alignment:
Q  96 gtgattctcttttgcacaccttgtgcgagatgaatca 132  Q
    |||||||||||||||||| ||| ||||||||||||||    
T  34015209 gtgattctcttttgcacatcttatgcgagatgaatca 34015245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 96 - 132
Target Start/End: Complemental strand, 30187307 - 30187271
Alignment:
Q  96 gtgattctcttttgcacaccttgtgcgagatgaatca 132  Q
    |||||||||||||||||||||||||||||||||||||    
T  30187307 gtgattctcttttgcacaccttgtgcgagatgaatca 30187271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 166
Target Start/End: Original strand, 37268884 - 37268954
Alignment:
Q  96 gtgattctcttttgcacaccttgtgcgagatgaatcatcagtggtaatctaattctctttttcgcttgttc 166  Q
    ||||||||| | ||||| ||||||||||||||||||| |||||||||| ||| | || |||| ||||||||    
T  37268884 gtgattctcctctgcacgccttgtgcgagatgaatcaccagtggtaatataagtttcatttttgcttgttc 37268954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 130
Target Start/End: Complemental strand, 55339470 - 55339436
Alignment:
Q  96 gtgattctcttttgcacaccttgtgcgagatgaat 130  Q
    |||||||||||||||||||||||||||||||||||    
T  55339470 gtgattctcttttgcacaccttgtgcgagatgaat 55339436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 132
Target Start/End: Original strand, 14092719 - 14092755
Alignment:
Q  96 gtgattctcttttgcacaccttgtgcgagatgaatca 132  Q
    ||||||||||||| |||||||||||||||||||||||    
T  14092719 gtgattctcttttacacaccttgtgcgagatgaatca 14092755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 132
Target Start/End: Complemental strand, 17794570 - 17794534
Alignment:
Q  96 gtgattctcttttgcacaccttgtgcgagatgaatca 132  Q
    |||||||||||||||||||||||||||| ||||||||    
T  17794570 gtgattctcttttgcacaccttgtgcgaaatgaatca 17794534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 132
Target Start/End: Complemental strand, 19103010 - 19102974
Alignment:
Q  96 gtgattctcttttgcacaccttgtgcgagatgaatca 132  Q
    |||||||||||||||||||||||||||| ||||||||    
T  19103010 gtgattctcttttgcacaccttgtgcgaaatgaatca 19102974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 96 - 143
Target Start/End: Complemental strand, 21095427 - 21095380
Alignment:
Q  96 gtgattctcttttgcacaccttgtgcgagatgaatcatcagtggtaat 143  Q
    ||||||||||||  ||| ||||||||||||||||||||| ||||||||    
T  21095427 gtgattctctttgacacgccttgtgcgagatgaatcatcggtggtaat 21095380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 129
Target Start/End: Complemental strand, 22757383 - 22757354
Alignment:
Q  100 ttctcttttgcacaccttgtgcgagatgaa 129  Q
    ||||||||||||||||||||||||||||||    
T  22757383 ttctcttttgcacaccttgtgcgagatgaa 22757354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 133
Target Start/End: Complemental strand, 28033601 - 28033565
Alignment:
Q  96 gtgattctcttttgcacaccttgtgcgagatgaatcat 133  Q
    |||||||||||| |||||||||||||||||||||||||    
T  28033601 gtgattctcttt-gcacaccttgtgcgagatgaatcat 28033565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 137
Target Start/End: Complemental strand, 10947688 - 10947648
Alignment:
Q  97 tgattctcttttgcacaccttgtgcgagatgaatcatcagt 137  Q
    ||||||||||||||| | ||||||||||||||||| |||||    
T  10947688 tgattctcttttgcatatcttgtgcgagatgaatcgtcagt 10947648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 132
Target Start/End: Original strand, 32649232 - 32649268
Alignment:
Q  96 gtgattctcttttgcacaccttgtgcgagatgaatca 132  Q
    |||||||||||||||||| ||| ||||||||||||||    
T  32649232 gtgattctcttttgcacatcttatgcgagatgaatca 32649268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 132
Target Start/End: Complemental strand, 38472826 - 38472790
Alignment:
Q  96 gtgattctcttttgcacaccttgtgcgagatgaatca 132  Q
    |||||||| ||||||||| ||||||||||||||||||    
T  38472826 gtgattcttttttgcacatcttgtgcgagatgaatca 38472790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 96 - 132
Target Start/End: Complemental strand, 16238756 - 16238720
Alignment:
Q  96 gtgattctcttttgcacaccttgtgcgagatgaatca 132  Q
    |||||||||||||||||||||||||||||||||||||    
T  16238756 gtgattctcttttgcacaccttgtgcgagatgaatca 16238720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 96 - 132
Target Start/End: Original strand, 26311151 - 26311187
Alignment:
Q  96 gtgattctcttttgcacaccttgtgcgagatgaatca 132  Q
    |||||||||||||||||||||||||||||||||||||    
T  26311151 gtgattctcttttgcacaccttgtgcgagatgaatca 26311187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 96 - 143
Target Start/End: Original strand, 11002389 - 11002436
Alignment:
Q  96 gtgattctcttttgcacaccttgtgcgagatgaatcatcagtggtaat 143  Q
    ||||||||||||||||| |||||||||||||||||||  |||||||||    
T  11002389 gtgattctcttttgcacgccttgtgcgagatgaatcactagtggtaat 11002436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 132
Target Start/End: Complemental strand, 25599263 - 25599227
Alignment:
Q  96 gtgattctcttttgcacaccttgtgcgagatgaatca 132  Q
    |||||||||||||||||||||||||| ||||||||||    
T  25599263 gtgattctcttttgcacaccttgtgcaagatgaatca 25599227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 130
Target Start/End: Original strand, 959865 - 959899
Alignment:
Q  96 gtgattctcttttgcacaccttgtgcgagatgaat 130  Q
    |||||||||||||||||| ||||||||||||||||    
T  959865 gtgattctcttttgcacatcttgtgcgagatgaat 959899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 138
Target Start/End: Complemental strand, 6570126 - 6570084
Alignment:
Q  96 gtgattctcttttgcacaccttgtgcgagatgaatcatcagtg 138  Q
    ||||||||||||||||||||| ||||||| ||||||| |||||    
T  6570126 gtgattctcttttgcacacctcgtgcgaggtgaatcaccagtg 6570084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 126
Target Start/End: Complemental strand, 22670074 - 22670044
Alignment:
Q  96 gtgattctcttttgcacaccttgtgcgagat 126  Q
    |||||||||||||||||||||||||||||||    
T  22670074 gtgattctcttttgcacaccttgtgcgagat 22670044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 132
Target Start/End: Complemental strand, 33033677 - 33033649
Alignment:
Q  104 cttttgcacaccttgtgcgagatgaatca 132  Q
    |||||||||||||||||||||||||||||    
T  33033677 cttttgcacaccttgtgcgagatgaatca 33033649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 132
Target Start/End: Complemental strand, 35499605 - 35499569
Alignment:
Q  96 gtgattctcttttgcacaccttgtgcgagatgaatca 132  Q
    ||||||| |||||||||||||||||| ||||||||||    
T  35499605 gtgattcacttttgcacaccttgtgcaagatgaatca 35499569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 132
Target Start/End: Original strand, 45066046 - 45066082
Alignment:
Q  96 gtgattctcttttgcacaccttgtgcgagatgaatca 132  Q
    |||||||||||||||||| ||| ||||||||||||||    
T  45066046 gtgattctcttttgcacatcttatgcgagatgaatca 45066082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 96 - 132
Target Start/End: Original strand, 27895499 - 27895535
Alignment:
Q  96 gtgattctcttttgcacaccttgtgcgagatgaatca 132  Q
    |||||||||||||||||||||||||||||||||||||    
T  27895499 gtgattctcttttgcacaccttgtgcgagatgaatca 27895535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 132
Target Start/End: Complemental strand, 33799182 - 33799150
Alignment:
Q  100 ttctcttttgcacaccttgtgcgagatgaatca 132  Q
    |||||||||||||||||||||||||||||||||    
T  33799182 ttctcttttgcacaccttgtgcgagatgaatca 33799150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 129
Target Start/End: Original strand, 17541506 - 17541535
Alignment:
Q  100 ttctcttttgcacaccttgtgcgagatgaa 129  Q
    ||||||||||||||||||||||||||||||    
T  17541506 ttctcttttgcacaccttgtgcgagatgaa 17541535  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 132
Target Start/End: Complemental strand, 45836148 - 45836112
Alignment:
Q  96 gtgattctcttttgcacaccttgtgcgagatgaatca 132  Q
    |||||| |||||||||||||||||||| |||||||||    
T  45836148 gtgattttcttttgcacaccttgtgcgggatgaatca 45836112  T

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Target: scaffold0385 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 132
Target Start/End: Complemental strand, 2839 - 2803
Alignment:
Q  96 gtgattctcttttgcacaccttgtgcgagatgaatca 132  Q
    ||||||||||||||||||| |||||||||||||||||    
T  2839 gtgattctcttttgcacacattgtgcgagatgaatca 2803  T

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Target: scaffold0015 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 131
Target Start/End: Complemental strand, 4887 - 4855
Alignment:
Q  99 attctcttttgcacaccttgtgcgagatgaatc 131  Q
    |||||||||||||||||||||||||||||||||    
T  4887 attctcttttgcacaccttgtgcgagatgaatc 4855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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