View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13975_low_6 (Length: 611)

Name: NF13975_low_6
Description: NF13975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13975_low_6
NF13975_low_6
[»] chr5 (4 HSPs)
chr5 (354-536)||(36599631-36599814)
chr5 (532-611)||(36599845-36599924)
chr5 (166-281)||(36599443-36599558)
chr5 (544-592)||(756924-756972)
[»] chr3 (4 HSPs)
chr3 (531-607)||(33309935-33310011)
chr3 (540-594)||(33309682-33309736)
chr3 (531-611)||(49745736-49745816)
chr3 (530-574)||(31993629-31993673)
[»] chr1 (1 HSPs)
chr1 (544-597)||(10840483-10840535)
[»] chr7 (2 HSPs)
chr7 (531-597)||(15998820-15998886)
chr7 (531-597)||(14584950-14585016)
[»] chr4 (1 HSPs)
chr4 (544-597)||(17947286-17947339)


Alignment Details
Target: chr5 (Bit Score: 160; Significance: 6e-85; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 354 - 536
Target Start/End: Original strand, 36599631 - 36599814
Alignment:
Q  354 tacatttcatccatcacaccaatgtctttaaacatttatgaaaacttatttgggattcaactatgttcctactatatcaaaatgcttagatcttactata 453  Q
    |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  36599631 tacatttcatccatcacaccaatgtctttaaatatttatgagaacttatttgggattcaactatgttcctactatatcaaaaagcttagatcttactata 36599730  T
Q  454 cgttcttaattttcattttactagccag-ccatttccttttaatttgtataagaaatatatgcatagttaattcaaaataaata 536  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  36599731 cgttcttaattttcattttactagccagtccatttccttttaatttgtataagaaatatatgcatagctaattcaaaataaata 36599814  T

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Target: chr5; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 532 - 611
Target Start/End: Original strand, 36599845 - 36599924
Alignment:
Q  532 aaatatatagtgaattttgatttcagtctcttaaaaataaaacgggatgttttcaccctcacaaaacattccatttcatt 611  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36599845 aaatatatagtgaattttgatttcagtctcttaaaaataaaacgggatgttttcaccctcacaaaacattccatttcatt 36599924  T

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Target: chr5; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 166 - 281
Target Start/End: Original strand, 36599443 - 36599558
Alignment:
Q  166 gacattttatctttaaaagaatctcaaacnnnnnnnggactttattttataacagaacttcccagacaatctcaagtaccactttattaaagactatttt 265  Q
    ||||||||||||||||   ||||||||||       |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  36599443 gacattttatctttaatcaaatctcaaactttttttggactttattttataacagaacttcccagacaatctcaagtatcactttattaaagactatttt 36599542  T
Q  266 tagttatattttccac 281  Q
    ||||||||||||||||    
T  36599543 tagttatattttccac 36599558  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 544 - 592
Target Start/End: Complemental strand, 756972 - 756924
Alignment:
Q  544 aattttgatttcagtctcttaaaaataaaacgggatgttttcaccctca 592  Q
    ||||||||||| ||||||| ||||||||||||  ||||||||| |||||    
T  756972 aattttgattttagtctctaaaaaataaaacgcaatgttttcatcctca 756924  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 531 - 607
Target Start/End: Complemental strand, 33310011 - 33309935
Alignment:
Q  531 taaatatatagtgaattttgatttcagtctcttaaaaataaaacgggatgttttcaccctcacaaaacattccattt 607  Q
    ||||||||||| ||||||| |||| |||| || |||||||||||||| |||||||| |||||||||| ||| |||||    
T  33310011 taaatatatagcgaatttttattttagtccctaaaaaataaaacggggtgttttcatcctcacaaaaaatttcattt 33309935  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 540 - 594
Target Start/End: Original strand, 33309682 - 33309736
Alignment:
Q  540 agtgaattttgatttcagtctcttaaaaataaaacgggatgttttcaccctcaca 594  Q
    ||||||||||||||| |||| || ||||||||||||||||||||||| |||||||    
T  33309682 agtgaattttgattttagtccctaaaaaataaaacgggatgttttcatcctcaca 33309736  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 531 - 611
Target Start/End: Original strand, 49745736 - 49745816
Alignment:
Q  531 taaatatatagtgaattttgatttcagtctcttaaaaataaaacgggatgttttcaccctcacaaaacattccatttcatt 611  Q
    |||| ||||| ||||||||||||| ||| | | |||||||||||||||||||||||  |||||||||  |||| |||||||    
T  49745736 taaaaatataatgaattttgattttagtatttaaaaaataaaacgggatgttttcattctcacaaaattttccgtttcatt 49745816  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 530 - 574
Target Start/End: Original strand, 31993629 - 31993673
Alignment:
Q  530 ataaatatatagtgaattttgatttcagtctcttaaaaataaaac 574  Q
    ||||| |||||| |||||||||||  |||||||||||||||||||    
T  31993629 ataaaaatatagcgaattttgattgtagtctcttaaaaataaaac 31993673  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 544 - 597
Target Start/End: Complemental strand, 10840535 - 10840483
Alignment:
Q  544 aattttgatttcagtctcttaaaaataaaacgggatgttttcaccctcacaaaa 597  Q
    ||||||||||| |||| |||||||||||||||||||||||||| ||||||||||    
T  10840535 aattttgattttagtc-cttaaaaataaaacgggatgttttcatcctcacaaaa 10840483  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 531 - 597
Target Start/End: Original strand, 15998820 - 15998886
Alignment:
Q  531 taaatatatagtgaattttgatttcagtctcttaaaaataaaacgggatgttttcaccctcacaaaa 597  Q
    |||| ||||||| ||||||||||| |||| || |||||||||||| |||||||||| | ||||||||    
T  15998820 taaaaatatagtaaattttgattttagtccctaaaaaataaaacgtgatgttttcatcatcacaaaa 15998886  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 531 - 597
Target Start/End: Original strand, 14584950 - 14585016
Alignment:
Q  531 taaatatatagtgaattttgatttcagtctcttaaaaataaaacgggatgttttcaccctcacaaaa 597  Q
    |||| ||||| | ||||||||||| |||| || |||||||||||| |||||||||| | ||||||||    
T  14584950 taaaaatataataaattttgattttagtccctaaaaaataaaacgtgatgttttcatcatcacaaaa 14585016  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 544 - 597
Target Start/End: Complemental strand, 17947339 - 17947286
Alignment:
Q  544 aattttgatttcagtctcttaaaaataaaacgggatgttttcaccctcacaaaa 597  Q
    ||||||||||| |||| || |||||||||| | |||||||||| ||||||||||    
T  17947339 aattttgattttagtccctaaaaaataaaatgagatgttttcatcctcacaaaa 17947286  T

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