View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13975_low_61 (Length: 322)
Name: NF13975_low_61
Description: NF13975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13975_low_61 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 71 - 307
Target Start/End: Original strand, 12877797 - 12878048
Alignment:
| Q |
71 |
tttagcttcttcaaaagaaccaagaccaacgcatacacttaatacgaacaactaccttaaaatgattagccgtttttccattaaataaa----gagatat |
166 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
12877797 |
tttagcttcttcaaaagaaccaagaccaaggcatacacttaatacgaacaactaccttaaaatgattagccgtttttccattaaaaaaaaaaagagatat |
12877896 |
T |
|
| Q |
167 |
taaaggttaaggaaagaaaatataaatat----------tttgtaggataatggtgaaaaatggtaa-ttcaattttttgaaagtttaaaaattatagtt |
255 |
Q |
| |
|
|| |||||| ||||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
12877897 |
tataggttagggaaacaaaatataaatatatataaatattttgtaggataatggtgaaaaatggtaaattcaattttttgaaaatttaaaaattatagtt |
12877996 |
T |
|
| Q |
256 |
tctgatgtaaaattacaatattttatttcttcaacaaataccctaaaacact |
307 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12877997 |
tctaatgtaaaattacaatattttatttcttcaacaaataccctaaaacact |
12878048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 12877675 - 12877730
Alignment:
| Q |
8 |
atattccaagatcaaggaaatccacttgagttggtctagtgaca-tggtttgggat |
62 |
Q |
| |
|
|||| |||| ||||||| ||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
12877675 |
atataccaatatcaagggaatccacttgagttggtctagtggcattggtttgggat |
12877730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University