View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13975_low_62 (Length: 319)
Name: NF13975_low_62
Description: NF13975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13975_low_62 |
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Alignment Details
Target: chr3 (Bit Score: 141; Significance: 6e-74; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 4 - 160
Target Start/End: Complemental strand, 37119530 - 37119374
Alignment:
| Q |
4 |
atgtcgaagaatattattcaggagtggaaagtgcagctataaaaggagatagcaaagatcaaatagaggtaactggagaacaaatagacgcagctaaact |
103 |
Q |
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||||| || ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37119530 |
atgtccaaaaatattattcaggagtggaaagtgcagctgtaaaaggagatagcaaggatcaaatagaggtaactggagaacaaatagacgcagctaaact |
37119431 |
T |
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| Q |
104 |
cacatgtctacttagaaagaaattctgtcatgcagatttggtgagtgttggtgaagt |
160 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37119430 |
cacatgtctacttagaaagaaattctgtcatgcagatttggtgagtgttggtgaagt |
37119374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 205 - 306
Target Start/End: Complemental strand, 37124986 - 37124885
Alignment:
| Q |
205 |
cttgtgtagctggttatcctcattaccctgtccctgtgtgtgagataaggaacctgtgtcaatgtgatgaaccttcttgttccataatgtaaatgtcatc |
304 |
Q |
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||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37124986 |
cttgtgtagctagtattcctcattaccctgtccctgtgtgtgagataaggaacctgtgtcaatgtgatgaaccttcttgttccataatgtaaatgtcatc |
37124887 |
T |
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| Q |
305 |
aa |
306 |
Q |
| |
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|| |
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| T |
37124886 |
aa |
37124885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 18 - 155
Target Start/End: Complemental strand, 37131238 - 37131101
Alignment:
| Q |
18 |
tattcaggagtggaaagtgcagctataaaaggagatagcaaagatcaaatagaggtaactggagaacaaatagacgcagctaaactcacatgtctactta |
117 |
Q |
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||||||||||| ||| || |||||||| ||||||| | ||| ||||||||||||||||| |||||||||||||| ||| || |||||||| ||| || | |
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| T |
37131238 |
tattcaggagtagaaggtacagctatacaaggagaaaacaaggatcaaatagaggtaacaggagaacaaatagattcagttagactcacatctctgctaa |
37131139 |
T |
|
| Q |
118 |
gaaagaaattctgtcatgcagatttggtgagtgttggt |
155 |
Q |
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| T |
37131138 |
gaaagaaattctgtcatgcagaattggtgagtgttggt |
37131101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 190 - 254
Target Start/End: Complemental strand, 37119344 - 37119280
Alignment:
| Q |
190 |
caattgtagcatggccttgtgtagctggttatcctcattaccctgtccctgtgtgtgagataagg |
254 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37119344 |
caattgtagcatggccttgtgtagctggttatcctcattaccctgtccctgtgtgtgagataagg |
37119280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 18 - 149
Target Start/End: Original strand, 37135158 - 37135289
Alignment:
| Q |
18 |
tattcaggagtggaaagtgcagctataaaaggagatagcaaagatcaaatagaggtaactggagaacaaatagacgcagctaaactcacatgtctactta |
117 |
Q |
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||||||||||||||| || || ||||||||||||||| ||| ||||||||||| |||||||||||| | || ||| ||| |||||| ||| |||||| | |
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| T |
37135158 |
tattcaggagtggaaggtacaactataaaaggagataacaaggatcaaatagaagtaactggagaagagattgactcagttaaactggcatctctactaa |
37135257 |
T |
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| Q |
118 |
gaaagaaattctgtcatgcagatttggtgagt |
149 |
Q |
| |
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||||||||||| || ||||||||||||||||| |
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| T |
37135258 |
gaaagaaattcggttatgcagatttggtgagt |
37135289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 131
Target Start/End: Complemental strand, 37125177 - 37125064
Alignment:
| Q |
18 |
tattcaggagtggaaagtgcagctataaaaggagatagcaaagatcaaatagaggtaactggagaacaaatagacgcagctaaactcacatgtctactta |
117 |
Q |
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|||| |||||||||||||||||||||| ||||| ||||||| ||| |||| ||||| || |||||| |||||||| ||| || |||||||||||| || | |
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| T |
37125177 |
tatttaggagtggaaagtgcagctatacaaggacatagcaaggataaaatggaggttacaggagaataaatagactcagttagactcacatgtctgctaa |
37125078 |
T |
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| Q |
118 |
gaaagaaattctgt |
131 |
Q |
| |
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|||||||||||||| |
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| T |
37125077 |
gaaagaaattctgt |
37125064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 104; Significance: 8e-52; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 18 - 161
Target Start/End: Original strand, 1193920 - 1194063
Alignment:
| Q |
18 |
tattcaggagtggaaagtgcagctataaaaggagatagcaaagatcaaatagaggtaactggagaacaaatagacgcagctaaactcacatgtctactta |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||| ||| || |||||||| ||| || | |
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| T |
1193920 |
tattcaggagtggaaagtgcagctataaaaggagatagcaaggatcaaatagagataacaggagaacaaatagactcagttagactcacatttctgctaa |
1194019 |
T |
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| Q |
118 |
gaaagaaattctgtcatgcagatttggtgagtgttggtgaagtg |
161 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
1194020 |
gaaagaaattctgtcatgcagaattggtgagtgttggtgaagtg |
1194063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 18 - 161
Target Start/End: Complemental strand, 31297121 - 31296978
Alignment:
| Q |
18 |
tattcaggagtggaaagtgcagctataaaaggagatagcaaagatcaaatagaggtaactggagaacaaatagacgcagctaaactcacatgtctactta |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||| ||||||||||||||| ||| || | |||||| ||| || | |
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| T |
31297121 |
tattcaggagtggaaagtgcagctataaaagcagatagcaaggatcaaatagagataacaggagaacaaatagactcagttagagtcacatctctgctaa |
31297022 |
T |
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| Q |
118 |
gaaagaaattctgtcatgcagatttggtgagtgttggtgaagtg |
161 |
Q |
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|||||||||| ||||||||||| ||||||||||||||||||||| |
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| T |
31297021 |
gaaagaaattatgtcatgcagaattggtgagtgttggtgaagtg |
31296978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 149
Target Start/End: Original strand, 20269090 - 20269221
Alignment:
| Q |
18 |
tattcaggagtggaaagtgcagctataaaaggagatagcaaagatcaaatagaggtaactggagaacaaatagacgcagctaaactcacatgtctactta |
117 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||| ||| ||||||||||| |||||||||||| | || ||| ||| |||||| ||| |||||| | |
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| T |
20269090 |
tattcaggagtggaaggtgcaactataaaaggagataacaaggatcaaatagaagtaactggagaagagattgactcagttaaactggcatctctactaa |
20269189 |
T |
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| Q |
118 |
gaaagaaattctgtcatgcagatttggtgagt |
149 |
Q |
| |
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||||||||||| || ||||||||||||||||| |
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| T |
20269190 |
gaaagaaattcggttatgcagatttggtgagt |
20269221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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