View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13975_low_64 (Length: 315)
Name: NF13975_low_64
Description: NF13975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13975_low_64 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 14 - 300
Target Start/End: Original strand, 49005348 - 49005634
Alignment:
| Q |
14 |
gttgatgatgatttgagctttgctaaagcttagcatattttaaagggttgatattgagaatgagattttagtagcagggtttcaaacgtctactgattaa |
113 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
49005348 |
gttgatgatgatttgagctttgctaaagcctagcatattttaaagggttaatattgagaatgagattttagtagcaggttttcaaacgtctactgattaa |
49005447 |
T |
|
| Q |
114 |
atgaaaatttatgaggttttccaaataatctttgttagtgaacattgaattaattatgtttgactctggtttatactggagtctttgctatagttctctg |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49005448 |
atgaaaatttatgaggttttccaaataatctttgttagtgaacattgaattaattatgtttgactctggtttatactggagtctttgctatagttctctg |
49005547 |
T |
|
| Q |
214 |
taaatcagtaatgagtcaccgaagacataaggatgaaaatattcacggaattgattgtgatcaaactcatgtgtggtaacatcatgt |
300 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
49005548 |
taaatcagtaatgagtcactgaagacataaggataaaaatattcacggaattgattgtgatcaaactcatgtgtagtaacatcatgt |
49005634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 14 - 132
Target Start/End: Original strand, 38161366 - 38161484
Alignment:
| Q |
14 |
gttgatgatgatttgagctttgctaaagcttagcatattttaaagggttgatattgagaatgagattttagtagcagggtttcaaacgtctactgattaa |
113 |
Q |
| |
|
|||| |||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||| ||||| | |||| |||||||||||||||| |
|
|
| T |
38161366 |
gttgttgataatttgagctttgctaaatcctagcatattttaaagggttgatattgagaatgacattttaatagcatgttttccaacgtctactgattaa |
38161465 |
T |
|
| Q |
114 |
atgaaaatttatgaggttt |
132 |
Q |
| |
|
||||| |||||||||||| |
|
|
| T |
38161466 |
atgaatgtttatgaggttt |
38161484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 14 - 118
Target Start/End: Original strand, 38139811 - 38139913
Alignment:
| Q |
14 |
gttgatgatgatttgagctttgctaaagcttagcatattttaaagggttgatattgagaatgagattttagtagcagggtttcaaacgtctactgattaa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||| ||| ||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
38139811 |
gttgatgatgatttgagctttgctaaagatttgcattttt--aagggttactattgagaatgagattttagtagcaggttttccaacgtctactgattaa |
38139908 |
T |
|
| Q |
114 |
atgaa |
118 |
Q |
| |
|
||||| |
|
|
| T |
38139909 |
atgaa |
38139913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 14 - 132
Target Start/End: Original strand, 38117588 - 38117701
Alignment:
| Q |
14 |
gttgatgatgatttgagctttgctaaagcttagcatattttaaagggttgatattgagaatgagattttagtagcagggtttcaaacgtctactgattaa |
113 |
Q |
| |
|
||||||||||||||||||||||||| ||| | |||| ||||| |||||||||||||||| || |||||||||||| |||| |||||||||||||||| |
|
|
| T |
38117588 |
gttgatgatgatttgagctttgctatagcctggcattttttagagggttgatattgaga-tg----tttagtagcaggttttccaacgtctactgattaa |
38117682 |
T |
|
| Q |
114 |
atgaaaatttatgaggttt |
132 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
38117683 |
gtgaaaatttatgaggttt |
38117701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 220 - 288
Target Start/End: Original strand, 38140078 - 38140145
Alignment:
| Q |
220 |
agtaatgagtcaccgaagacataaggat-gaaaatattcacggaattgattgtgatcaaactcatgtgtg |
288 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
38140078 |
agtaatgagtcactgaagacataaggataaaaaatattcac--agttgattgtgatcaaactcatgtgtg |
38140145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University