View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13975_low_65 (Length: 313)
Name: NF13975_low_65
Description: NF13975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13975_low_65 |
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Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 18 - 303
Target Start/End: Complemental strand, 43572003 - 43571718
Alignment:
| Q |
18 |
acttacttgtatttgaattgagtcctcgggtgttagaagcatcggctttccatctacaggtgactgaaacgtgacacctttttctgtgatatccgcaaga |
117 |
Q |
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| T |
43572003 |
acttacttgtatttgaattgagtcctcgggtgttagaagcatcggctttccatctacaggtgactgaaatgtgacacctttttctgtgatatccgcaaga |
43571904 |
T |
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| Q |
118 |
tgcaaaagtgaaaccatttgaaagccaccagagtcggtaagcatggcgcgtggccaattcataaatttgtgaagaccaccaagttggtcaagaagctcag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43571903 |
tgcaaaagtgaaaccatttgaaagccaccagagtcggtaagcatggcgcgtggccaattcataaatttgtgaagaccaccaagttggtcaagaagctcag |
43571804 |
T |
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| Q |
218 |
aagtaggtctcaaagccaaatgataagtatttccaagtattatttggcaaccaatgtcctcaagctggctagttgtcagacctttg |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
43571803 |
aagtaggtctcaaagccaaatgataagtatttccaagtattatttggcaaccaatgtcctcaagctggctagttgtcaaacctttg |
43571718 |
T |
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