View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13975_low_67 (Length: 309)
Name: NF13975_low_67
Description: NF13975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13975_low_67 |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 4 - 294
Target Start/End: Original strand, 47745320 - 47745610
Alignment:
| Q |
4 |
atgccaagataagaacaagtaaaacaaggtaacctaactgtaatcaccatgtagtaattaagtatgattaggtaatgacaattagtaattattaccttct |
103 |
Q |
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| T |
47745320 |
atgccaagataagaacaagtaaaacaaggtaacctaactgtaatcaccatgtagtaattaagtatgattaggtaatgacaattagtaattattaccttct |
47745419 |
T |
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| Q |
104 |
tctggtggggaggtttcatcttggtctattactgtcgtaggaccatagaaggaatatatttcatatctaatattacaacttcgtttgagaactctagcac |
203 |
Q |
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| T |
47745420 |
tctggtggggaggtttcatcttggtctattactgtcgtaggaccatagaaggaatatatttcatatctaatattacaacttagtttgagaactctaccac |
47745519 |
T |
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| Q |
204 |
caatcttcttattnnnnnnncttggaatttctgaaatagcacgctctaaacaatcattgcaatcttgtcctgacaagtcaggtgtacactg |
294 |
Q |
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| T |
47745520 |
caatcttgttataaaaaaaacttggagtttctgaaatagcacgctctaaacaatcattgcaatcttgtcctgacaagtcaggtgtacactg |
47745610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 15 - 294
Target Start/End: Original strand, 47712742 - 47713018
Alignment:
| Q |
15 |
agaacaagtaaaacaaggtaacctaactgtaatcaccatgtagtaattaagtatgattaggt-aatgacaattagtaattattaccttcttctggtgggg |
113 |
Q |
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| T |
47712742 |
agaacaagtaaaacaaaataacctaaatttaatcaccttgtagcaat-aagtatgattaagttaatgacaatcagtaatta---ccttcttctgatgggg |
47712837 |
T |
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| Q |
114 |
aggtttcatcttggtctattactgtcgtaggaccatagaaggaatatatttcatatctaatattacaacttcgtttgagaactctagcaccaatcttctt |
213 |
Q |
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| T |
47712838 |
agtgttcatcttggtttattactgttgtaggatcagagaagcgatagacttcatatctaatattacaacttggtttgacaactctacaaccaatcttgtt |
47712937 |
T |
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| Q |
214 |
attnnnnnnncttggaatttctgaaatagcacgctctaaacaatcattgcaatcttgtcctgacaagtcaggtgtacactg |
294 |
Q |
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| T |
47712938 |
ataacagtaaattggaatttctgatatagcaaactctaaacaatcattgcaatcttgctctgacaaatcaggtgtacactg |
47713018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 67 - 294
Target Start/End: Original strand, 47717597 - 47717821
Alignment:
| Q |
67 |
atgattaggtaatgacaattagtaattattaccttcttctggtggggaggtttcatcttggtctattactgtcgtaggaccatagaaggaatatatttca |
166 |
Q |
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| T |
47717597 |
atgattaattaacgacaattagtaatta---ccttcttctgatggggaggtttcacctgggtctattacaggtgtaggatcatagaaggaatagatttca |
47717693 |
T |
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| Q |
167 |
tatctaatattacaacttcgtttgagaactctagcaccaatcttcttattnnnnnnncttggaatttctgaaatagcacgctctaaacaatcattgcaat |
266 |
Q |
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| T |
47717694 |
tgtctaatattgcaacttggtttgagaactataccgccaaccttgttattaaaataaataggaatttctgaaatagcacgctctaaacaatcattgcaat |
47717793 |
T |
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| Q |
267 |
cttgtcctgacaagtcaggtgtacactg |
294 |
Q |
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|||| ||| || |||||||||||||| |
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| T |
47717794 |
cttgctgtgataaatcaggtgtacactg |
47717821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 67 - 294
Target Start/End: Original strand, 47759709 - 47759933
Alignment:
| Q |
67 |
atgattaggtaatgacaattagtaattattaccttcttctggtggggaggtttcatcttggtctattactgtcgtaggaccatagaaggaatatatttca |
166 |
Q |
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||||||| ||||||||||||||||||| |||||||||| ||||||||||||| || |||||||| | | |||||| |||||||| | | ||||| |
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| T |
47759709 |
atgattaattaatgacaattagtaatta---ccttcttctgatggggaggtttcacctgggtctattgcaggtgtaggatcatagaagctagaggtttca |
47759805 |
T |
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| Q |
167 |
tatctaatattacaacttcgtttgagaactctagcaccaatcttcttattnnnnnnncttggaatttctgaaatagcacgctctaaacaatcattgcaat |
266 |
Q |
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||||| |||||||||||| |||||||||||||| |||||||||| ||||| |||||||| ||||| ||||||| |||||||||| |||||||| |
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| T |
47759806 |
tatctgatattacaacttggtttgagaactctaccaccaatcttgttattacaacaacttggaatatctgagatagcaccatctaaacaattattgcaat |
47759905 |
T |
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| Q |
267 |
cttgtcctgacaagtcaggtgtacactg |
294 |
Q |
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| T |
47759906 |
cttgctctgacaaatcaggtgtgcactg |
47759933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 102 - 216
Target Start/End: Original strand, 47704828 - 47704942
Alignment:
| Q |
102 |
cttctggtggggaggtttcatcttggtctattactgtcgtaggaccatagaaggaatatatttcatatctaatattacaacttcgtttgagaactctagc |
201 |
Q |
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|||||| |||||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||||| |||||| |||||| |||||| | |
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| T |
47704828 |
cttctgatggggaggtttcatctgggtctattactgtcgtaggaccatagaagggattggtttcatatctaatattgcaacttggtttgataactcttcc |
47704927 |
T |
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| Q |
202 |
accaatcttcttatt |
216 |
Q |
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||||||||| ||||| |
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| T |
47704928 |
accaatcttgttatt |
47704942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 28830930 - 28830976
Alignment:
| Q |
162 |
tttcatatctaatattacaacttcgtttgagaactctagcaccaatc |
208 |
Q |
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| T |
28830930 |
tttcatatctaatattacaacttggtttcataactctagcaccaatc |
28830976 |
T |
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