View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13975_low_68 (Length: 300)
Name: NF13975_low_68
Description: NF13975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13975_low_68 |
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Alignment Details
Target: chr8 (Bit Score: 260; Significance: 1e-145; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 10 - 281
Target Start/End: Complemental strand, 7023858 - 7023587
Alignment:
| Q |
10 |
tccaagaatatattcttttcatgataatcaagattagtgtacatcaatctagatacatcatggacagttctagtctgccctattttcatattccttgcta |
109 |
Q |
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| T |
7023858 |
tccaaaaatatattcttttcatgataatcaagattagtgtacatcaatctagatacatcatggacagttctagtctgccctattttgatattccttgcta |
7023759 |
T |
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| Q |
110 |
ggctttcccatatggctttatctttcccacaaagatacttagctaaagttgtaagaacttgtggaacaccttcagcaagatcgaccatcctctccgatag |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7023758 |
ggctttcccatatggctttatctttcccacaaagatacttacctaaagttgtaagaacttgtggaacaccttcagcaagatcgaccatcctctccgatag |
7023659 |
T |
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| Q |
210 |
ctcacggtactccatttcattatgcttatgtttagcaaaggcatgcaaattgaaaagcagaagtgattcaac |
281 |
Q |
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| T |
7023658 |
ctcacggtactccatttcattatgcttatgtttagcaaaggcatgcaaattgaaaagcagaagtgattcaac |
7023587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 10 - 267
Target Start/End: Complemental strand, 7031247 - 7030990
Alignment:
| Q |
10 |
tccaagaatatattcttttcatgataatcaagattagtgtacatcaatctagatacatcatggacagttctagtctgccctattttcatattccttgcta |
109 |
Q |
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| T |
7031247 |
tccaataatatattcttttcatgagaatcaagattagtgtatatcaatctaaatacaacatggacattttcaatctgctctattttcagaatctttgcct |
7031148 |
T |
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| Q |
110 |
ggctttcccatatggctttatctttcccacaaagatacttagctaaagttgtaagaacttgtggaacaccttcagcaagatcgaccatcctctccgatag |
209 |
Q |
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| T |
7031147 |
ggctttcccatatgtccttatctttcccacaaagaaggttagctaaagctttaagaactagtggaacacctgcggtataatcgaccatcttctttgatag |
7031048 |
T |
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| Q |
210 |
ctcacggtactccatttcattatgcttatgtttagcaaaggcatgcaaattgaaaagc |
267 |
Q |
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|||| |||||||||||| ||||| |||||||| |||||| ||||||||||||||| |
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| T |
7031047 |
ctcatagtactccatttcgagatgctcatgtttagtaaaggcgtgcaaattgaaaagc |
7030990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 7 - 267
Target Start/End: Original strand, 7075003 - 7075263
Alignment:
| Q |
7 |
atgtccaagaatatattcttttcatgataatcaagattagtgtacatcaatctagatacatcatggacagttctagtctgccctattttcatattccttg |
106 |
Q |
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||||| |||||||| ||||||||| |||||||||||||||||| ||||||||| | ||||| |||||| || | ||||| ||||||| | |||||||| |
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| T |
7075003 |
atgtctaagaatatgatcttttcataataatcaagattagtgtatatcaatctaaaaacatcgtggacattttcaatctgctctattttaagattccttg |
7075102 |
T |
|
| Q |
107 |
ctaggctttcccatatggctttatctttcccacaaagatacttagctaaagttgtaagaacttgtggaacaccttcagcaagatcgaccatcctctccga |
206 |
Q |
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| T |
7075103 |
attggctttcccatatggctttatctttcccacgaagaaggttagctaaagctttaagaaccagtggaacacctgcggtataatccaccattttctttga |
7075202 |
T |
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| Q |
207 |
tagctcacggtactccatttcattatgcttatgtttagcaaaggcatgcaaattgaaaagc |
267 |
Q |
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| T |
7075203 |
tagcttatagtactccatttcaagatgcttttgtttattaaaggcatgcaagttgaaaagc |
7075263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 7 - 267
Target Start/End: Complemental strand, 7036959 - 7036699
Alignment:
| Q |
7 |
atgtccaagaatatattcttttcatgataatcaagattagtgtacatcaatctagatacatcatggacagttctagtctgccctattttcatattccttg |
106 |
Q |
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||||| ||||||||| ||||||||| |||||||||||||||||| ||||||||| | |||||||||||| || | ||||| ||||||| | |||||||| |
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| T |
7036959 |
atgtctaagaatataatcttttcataataatcaagattagtgtatatcaatctaaaaacatcatggacattttcaatctgctctattttaagattccttg |
7036860 |
T |
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| Q |
107 |
ctaggctttcccatatggctttatctttcccacaaagatacttagctaaagttgtaagaacttgtggaacaccttcagcaagatcgaccatcctctccga |
206 |
Q |
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| || ||||||||||||||||||||||||||| |||| |||||||||| | ||||||| ||||||||||| | | | ||| ||||| ||| || |
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| T |
7036859 |
attgggtttcccatatggctttatctttcccacgaagaaggttagctaaagctttaagaaccagtggaacacctgcggtataatcaaccatattctttga |
7036760 |
T |
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| Q |
207 |
tagctcacggtactccatttcattatgcttatgtttagcaaaggcatgcaaattgaaaagc |
267 |
Q |
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||||| | |||||||||||| ||||| |||||||| |||||| | |||||||||||| |
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| T |
7036759 |
tagctaatagtactccatttcgagatgctcatgtttagtaaaggcgtaaaaattgaaaagc |
7036699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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