View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13975_low_7 (Length: 594)
Name: NF13975_low_7
Description: NF13975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13975_low_7 |
 | |
|
| [»] scaffold0041 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 401; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 125 - 548
Target Start/End: Complemental strand, 41088440 - 41088016
Alignment:
| Q |
125 |
acgtacgcagccaggctcaaatctcctcttcacagggcttaaacacccaaatccgaatctgcaatacat-tgttttcaacttagatcaatctaggctttg |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
41088440 |
acgtacgcagccaggctcaaatctcctcttcacagggcttaatcacccaaatccgaatctgtaatacatctgttttcaacttcgatcaatctaggctttg |
41088341 |
T |
|
| Q |
224 |
atttctattcatattttctatcggtggaggcaaattttctaaggacaataattatattgaaatgtttaattatgcaatatttttcacataacaaaataat |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41088340 |
atttctattcatattttctatcggtggaggcaaattttctaaggacaataattatattgaaatgtttaattatgcaatatttttcacataacaaaataat |
41088241 |
T |
|
| Q |
324 |
tcccttttgaattgaaatatattttaaaaatgcatccgtttctttaaaaatgccgcaaacaatagggtgtaaaattgaccagtatagtcgttagcatttg |
423 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
41088240 |
tcccttttgaattgaaatatattttaaaaatgcatccgtttctttaaaaatgccgcaaacaatagggtgaaaaattgaccagtatagtcgttagcatttg |
41088141 |
T |
|
| Q |
424 |
ctattaaataaaaattgttaaatcctgtaatttttctagagcaaaatcgtgtaaaaattgtttaccacgttccttttgctttgattaataactattgcat |
523 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41088140 |
ctattaaataaaaattgttaaatcctgtaatttttctagagcaaaatcgtgtaaaaattgtttaccacgttccttttgctttgattaataactattgcat |
41088041 |
T |
|
| Q |
524 |
ttaatttgtatacactaaaattgta |
548 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
41088040 |
ttaatttgtatacactaaaattgta |
41088016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 9 - 117
Target Start/End: Complemental strand, 41089289 - 41089181
Alignment:
| Q |
9 |
cgaagaatataattcaatttgatttcttaactagtgatctaaacttgttagcatttatctttaaatataagaagattgttcaatagacccttttacattg |
108 |
Q |
| |
|
|||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41089289 |
cgaataatataatttaatttgatttcttaattagtgatctaaacttgttagcatttatctttaaatataagaagattgttcaatagacccttttacattg |
41089190 |
T |
|
| Q |
109 |
ttcattatc |
117 |
Q |
| |
|
||||||||| |
|
|
| T |
41089189 |
ttcattatc |
41089181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 96
Target Start/End: Complemental strand, 41088587 - 41088541
Alignment:
| Q |
50 |
aacttgttagcatttatctttaaatataagaagattgttcaatagac |
96 |
Q |
| |
|
|||||||||||||||| |||||||| ||| ||||||||||||||||| |
|
|
| T |
41088587 |
aacttgttagcatttacctttaaatctaaaaagattgttcaatagac |
41088541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 181 - 548
Target Start/End: Original strand, 102727 - 103095
Alignment:
| Q |
181 |
atctgcaatacat-tgttttcaacttagatcaatctaggctttgatttctattcatattttctatcggtggaggcaaattttctaaggacaataattata |
279 |
Q |
| |
|
||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
102727 |
atctgtaatacatctgttttcaacttcgatcaatctaggctttgatttctattcatattttctatcggtggaggcaaattttctaaggacaataattata |
102826 |
T |
|
| Q |
280 |
ttgaaatgtttaattatgcaatatttttcacataacaaaataattcccttttgaattgaaatatattttaaaaatgcatccgtttctttaaaaatgccgc |
379 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
102827 |
ttgaaatgtttaattatgcaatatttttcacataacaaaataattcccttttgaattgaaatatattttaaaaatgcatccgtttctttaaaaatgccgc |
102926 |
T |
|
| Q |
380 |
aaacaatagggtgtaaaattgaccagtatagtcgttagcatttgctattaaataaaaattgttaaatcctgtaatttttctagagcaaaatcgtgtaaaa |
479 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
102927 |
aaacaatagggtgaaaaattgaccagtatagtcgttagcatttgctattaaataaaaattgttaaatcctgtaatttttctagagcaaaatcgtgtaaaa |
103026 |
T |
|
| Q |
480 |
attgtttaccacgttccttttgctttgattaataactattgcatttaatttgtatacactaaaattgta |
548 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
103027 |
attgtttaccacgttccttttgctttgattaataactattgcatttaatttgtatacactaaaattgta |
103095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University