View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13975_low_71 (Length: 286)
Name: NF13975_low_71
Description: NF13975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13975_low_71 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 19 - 280
Target Start/End: Complemental strand, 55523483 - 55523222
Alignment:
| Q |
19 |
atcatcataatcgtaattttgaccgtatcaactacattttctcgcaatatgaaggttcaaaccgcaatttaaaataagagacgtgcatgatttatattga |
118 |
Q |
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| T |
55523483 |
atcatcataatcgtaattttgaccgtatcaactacattttctcgcaatataaaggttcaaaccgcaatttaaaataagagacgtgcgtgatttatattga |
55523384 |
T |
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| Q |
119 |
gaataaataatgacctgtagtcatgatcaagatcagggatctctgatatgttagagttaggaaggtggcgcaaaaagaaagtgctttcccaattcaagtc |
218 |
Q |
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| T |
55523383 |
gaataaataatgacctgtagtcatgatcaagatcagggatctctgatatgttaaagttaggaaggtggcgcaaaaagaaagtgctttcccaatccaagtc |
55523284 |
T |
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| Q |
219 |
attgatttcagactgagcaaactctaaacctttgcttgctaccatttctttgaacctttgct |
280 |
Q |
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| T |
55523283 |
attaatttcagactgagcaaactctaaacctttgcttgctaccatttctttgaacctttgct |
55523222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 9e-39; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 129 - 278
Target Start/End: Complemental strand, 8926626 - 8926477
Alignment:
| Q |
129 |
tgacctgtagtcatgatcaagatcagggatctctgatatgttagagttaggaaggtggcgcaaaaagaaagtgctttcccaattcaagtcattgatttca |
228 |
Q |
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||||||||| || | ||||||||| ||||||||||| || ||||| |||||| |||||||||||||||||||||||||||| ||| ||||| ||||| |
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| T |
8926626 |
tgacctgtaatcttcatcaagatctgggatctctgaaatattagaagaaggaagatggcgcaaaaagaaagtgctttcccaatccaaatcatttatttct |
8926527 |
T |
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| Q |
229 |
gactgagcaaactctaaacctttgcttgctaccatttctttgaacctttg |
278 |
Q |
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|||||| || |||| ||||||||||||||||||||||||||||||||||| |
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| T |
8926526 |
gactgaacacactccaaacctttgcttgctaccatttctttgaacctttg |
8926477 |
T |
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