View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13975_low_72 (Length: 268)
Name: NF13975_low_72
Description: NF13975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13975_low_72 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 12583152 - 12582928
Alignment:
| Q |
1 |
cttgttgaaacatttgaagcaatgcaaaagaaggatgttataagacccttcactctaatagctaccactattgatagcccaacatcatattgttttttac |
100 |
Q |
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| T |
12583152 |
cttgttgaaacatttgaagcaatgcaaaagaaggatgttataagacccttcactctaatagctaccactattgatagcccaacatcatattgttttttac |
12583053 |
T |
|
| Q |
101 |
gaattaaagtgtgtttactaacagcataatagtgtgtaccacggtcactgcccaatgcttttcannnnnnngtttctcttatgctccactacaacaaggt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
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| T |
12583052 |
gaattaaagtgtgtttactaacagcataatagtgtgtaccacggtcactgcccaatgcttttcacccccccgtttctcttatgctccactacaactaggt |
12582953 |
T |
|
| Q |
201 |
tccactcatattcactcctgtggtg |
225 |
Q |
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||| |||||||||||||| |||||| |
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| T |
12582952 |
tccgctcatattcactcccgtggtg |
12582928 |
T |
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