View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13975_low_73 (Length: 267)

Name: NF13975_low_73
Description: NF13975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13975_low_73
NF13975_low_73
[»] chr8 (17 HSPs)
chr8 (190-249)||(42234675-42234734)
chr8 (210-249)||(28644679-28644718)
chr8 (210-249)||(33072035-33072074)
chr8 (192-246)||(197666-197717)
chr8 (192-246)||(202184-202235)
chr8 (192-246)||(312503-312554)
chr8 (192-246)||(317021-317072)
chr8 (192-246)||(43807467-43807518)
chr8 (192-246)||(43812026-43812077)
chr8 (176-242)||(1286743-1286810)
chr8 (213-249)||(38757108-38757144)
chr8 (192-242)||(1291449-1291499)
chr8 (70-128)||(38757230-38757290)
chr8 (70-123)||(30405676-30405731)
chr8 (213-249)||(30405824-30405860)
chr8 (70-123)||(30410185-30410240)
chr8 (213-249)||(30410333-30410369)
[»] chr7 (14 HSPs)
chr7 (210-249)||(22901273-22901312)
chr7 (210-249)||(27756963-27757002)
chr7 (210-249)||(27761514-27761553)
chr7 (192-246)||(7940065-7940116)
chr7 (192-246)||(7944618-7944669)
chr7 (213-249)||(35705752-35705788)
chr7 (210-249)||(733667-733706)
chr7 (210-249)||(7466524-7466563)
chr7 (210-249)||(47419579-47419618)
chr7 (45-93)||(7939915-7939961)
chr7 (45-93)||(7944468-7944514)
chr7 (45-93)||(22901435-22901481)
chr7 (45-93)||(27757126-27757172)
chr7 (70-123)||(47419433-47419488)
[»] chr6 (11 HSPs)
chr6 (210-249)||(8315504-8315543)
chr6 (210-249)||(27552111-27552150)
chr6 (210-246)||(17780035-17780071)
chr6 (210-249)||(8320043-8320082)
chr6 (210-249)||(14531788-14531827)
chr6 (210-249)||(17096275-17096314)
chr6 (210-249)||(17886849-17886888)
chr6 (210-249)||(17895724-17895763)
chr6 (210-249)||(27574739-27574778)
chr6 (45-128)||(8319875-8319958)
chr6 (70-128)||(8315359-8315419)
[»] chr5 (23 HSPs)
chr5 (210-249)||(30695410-30695449)
chr5 (210-249)||(36632419-36632458)
chr5 (192-242)||(5733082-5733132)
chr5 (192-246)||(7099356-7099407)
chr5 (192-246)||(7103925-7103976)
chr5 (192-246)||(12018855-12018906)
chr5 (192-246)||(12023413-12023464)
chr5 (192-246)||(16794232-16794283)
chr5 (192-246)||(16798793-16798844)
chr5 (192-246)||(37658845-37658896)
chr5 (45-123)||(37658968-37659048)
chr5 (192-246)||(37682149-37682200)
chr5 (210-249)||(26336806-26336845)
chr5 (214-249)||(40367617-40367652)
chr5 (55-123)||(37682272-37682341)
chr5 (210-246)||(19502429-19502465)
chr5 (210-242)||(20830329-20830361)
chr5 (210-250)||(43385068-43385108)
chr5 (218-249)||(32485994-32486025)
chr5 (45-93)||(7099206-7099252)
chr5 (45-93)||(7103775-7103821)
chr5 (45-93)||(12019012-12019058)
chr5 (45-93)||(16798949-16798995)
[»] chr4 (15 HSPs)
chr4 (210-249)||(10317064-10317103)
chr4 (210-249)||(53722124-53722163)
chr4 (192-246)||(3770966-3771017)
chr4 (190-249)||(35842864-35842923)
chr4 (192-246)||(44147147-44147198)
chr4 (45-123)||(44147268-44147345)
chr4 (192-246)||(44151682-44151733)
chr4 (45-123)||(44151803-44151880)
chr4 (210-249)||(31670208-31670247)
chr4 (210-249)||(50627943-50627982)
chr4 (210-246)||(8892621-8892657)
chr4 (210-246)||(43683675-43683711)
chr4 (210-249)||(27186263-27186302)
chr4 (45-93)||(3771121-3771167)
chr4 (70-114)||(31670347-31670391)
[»] chr3 (12 HSPs)
chr3 (210-249)||(21847228-21847267)
chr3 (210-249)||(21850318-21850357)
chr3 (210-249)||(43547842-43547881)
chr3 (213-249)||(9105392-9105428)
chr3 (192-246)||(54167326-54167377)
chr3 (192-246)||(54171906-54171957)
chr3 (213-249)||(11004407-11004443)
chr3 (210-249)||(9697705-9697744)
chr3 (45-93)||(21847390-21847436)
chr3 (45-93)||(21850480-21850526)
chr3 (45-93)||(54167175-54167221)
chr3 (45-93)||(54171755-54171801)
[»] chr2 (11 HSPs)
chr2 (210-249)||(8055509-8055548)
chr2 (213-249)||(8050956-8050992)
chr2 (192-246)||(36670627-36670678)
chr2 (192-246)||(36675175-36675226)
chr2 (210-249)||(12999465-12999504)
chr2 (45-93)||(36670783-36670832)
chr2 (45-93)||(36675331-36675380)
chr2 (70-130)||(12999329-12999391)
chr2 (45-93)||(8051118-8051164)
chr2 (56-93)||(8055671-8055708)
chr2 (213-249)||(6463442-6463478)
[»] chr1 (8 HSPs)
chr1 (210-249)||(39793948-39793987)
chr1 (211-250)||(43591823-43591862)
chr1 (192-242)||(41879945-41879995)
chr1 (213-249)||(26311627-26311663)
chr1 (213-249)||(26316118-26316154)
chr1 (176-242)||(15757081-15757148)
chr1 (194-242)||(36164361-36164409)
chr1 (210-249)||(16588479-16588518)
[»] scaffold0440 (2 HSPs)
scaffold0440 (192-246)||(3104-3155)
scaffold0440 (192-246)||(7629-7680)
[»] scaffold0044 (3 HSPs)
scaffold0044 (192-246)||(44847-44898)
scaffold0044 (192-246)||(49427-49478)
scaffold0044 (45-93)||(44697-44743)


Alignment Details
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 190 - 249
Target Start/End: Original strand, 42234675 - 42234734
Alignment:
Q  190 gtttatatacaa-gtctaagataagttgcttgaagcacaagcaatgtaacaaactctagat 249  Q
    |||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||    
T  42234675 gtttatatacaatgtcta-gctaagttgcttgaagcacaagcaatgtaacaaactctagat 42234734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 210 - 249
Target Start/End: Complemental strand, 28644718 - 28644679
Alignment:
Q  210 taagttgcttgaagcacaagcaatgtaacaaactctagat 249  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  28644718 taagttgcttgaagcacaagcaatgtaacaaactctagat 28644679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 210 - 249
Target Start/End: Complemental strand, 33072074 - 33072035
Alignment:
Q  210 taagttgcttgaagcacaagcaatgtaacaaactctagat 249  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  33072074 taagttgcttgaagcacaagcaatgtaacaaactctagat 33072035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 246
Target Start/End: Original strand, 197666 - 197717
Alignment:
Q  192 ttatatacaagtctaagataagttgcttgaagcacaagcaatgtaacaaactcta 246  Q
    ||||||||||||||||   | ||||||||||||||||||||||||||||||||||    
T  197666 ttatatacaagtctaa---acgttgcttgaagcacaagcaatgtaacaaactcta 197717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 246
Target Start/End: Original strand, 202184 - 202235
Alignment:
Q  192 ttatatacaagtctaagataagttgcttgaagcacaagcaatgtaacaaactcta 246  Q
    ||||||||||||||||   | ||||||||||||||||||||||||||||||||||    
T  202184 ttatatacaagtctaa---acgttgcttgaagcacaagcaatgtaacaaactcta 202235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 246
Target Start/End: Original strand, 312503 - 312554
Alignment:
Q  192 ttatatacaagtctaagataagttgcttgaagcacaagcaatgtaacaaactcta 246  Q
    ||||||||||||||||   | ||||||||||||||||||||||||||||||||||    
T  312503 ttatatacaagtctaa---acgttgcttgaagcacaagcaatgtaacaaactcta 312554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 246
Target Start/End: Original strand, 317021 - 317072
Alignment:
Q  192 ttatatacaagtctaagataagttgcttgaagcacaagcaatgtaacaaactcta 246  Q
    ||||||||||||||||   | ||||||||||||||||||||||||||||||||||    
T  317021 ttatatacaagtctaa---acgttgcttgaagcacaagcaatgtaacaaactcta 317072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 246
Target Start/End: Original strand, 43807467 - 43807518
Alignment:
Q  192 ttatatacaagtctaagataagttgcttgaagcacaagcaatgtaacaaactcta 246  Q
    ||||||||||||||||   | ||||||||||||||||||||||||||||||||||    
T  43807467 ttatatacaagtctaa---acgttgcttgaagcacaagcaatgtaacaaactcta 43807518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 246
Target Start/End: Original strand, 43812026 - 43812077
Alignment:
Q  192 ttatatacaagtctaagataagttgcttgaagcacaagcaatgtaacaaactcta 246  Q
    ||||||||||||||||   | ||||||||||||||||||||||||||||||||||    
T  43812026 ttatatacaagtctaa---acgttgcttgaagcacaagcaatgtaacaaactcta 43812077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 242
Target Start/End: Complemental strand, 1286810 - 1286743
Alignment:
Q  176 tgtacaagtgatgggt-ttatatacaagtctaagataagttgcttgaagcacaagcaatgtaacaaac 242  Q
    |||||||||||  ||| |||||||||||||||  ||||||||||||||| |||||||| |||||||||    
T  1286810 tgtacaagtgaatggtcttatatacaagtctagtataagttgcttgaagtacaagcaaagtaacaaac 1286743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 213 - 249
Target Start/End: Complemental strand, 38757144 - 38757108
Alignment:
Q  213 gttgcttgaagcacaagcaatgtaacaaactctagat 249  Q
    |||||||||| ||||||||||||||||||||||||||    
T  38757144 gttgcttgaatcacaagcaatgtaacaaactctagat 38757108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 242
Target Start/End: Complemental strand, 1291499 - 1291449
Alignment:
Q  192 ttatatacaagtctaagataagttgcttgaagcacaagcaatgtaacaaac 242  Q
    |||||||||| ||||  |||||||||||||||||||||||  |||||||||    
T  1291499 ttatatacaaatctagtataagttgcttgaagcacaagcagagtaacaaac 1291449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 128
Target Start/End: Complemental strand, 38757290 - 38757230
Alignment:
Q  70 ttcagaagcagtttctgattctaatacttatatgaattaga--gagaattgagagaagaga 128  Q
    |||||||||||||||| |||||||   |||| |||||||||  ||||||||||||||||||    
T  38757290 ttcagaagcagtttcttattctaaggtttatgtgaattagagagagaattgagagaagaga 38757230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 123
Target Start/End: Original strand, 30405676 - 30405731
Alignment:
Q  70 ttcagaagcagtttctgattctaatacttatatgaattagag--agaattgagaga 123  Q
    ||||||||||||||||||||||||   |||| ||||||||||  ||||||||||||    
T  30405676 ttcagaagcagtttctgattctaaggtttatgtgaattagagagagaattgagaga 30405731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 249
Target Start/End: Original strand, 30405824 - 30405860
Alignment:
Q  213 gttgcttgaagcacaagcaatgtaacaaactctagat 249  Q
    ||||||||||| ||||||||||||||||| |||||||    
T  30405824 gttgcttgaagtacaagcaatgtaacaaattctagat 30405860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 123
Target Start/End: Original strand, 30410185 - 30410240
Alignment:
Q  70 ttcagaagcagtttctgattctaatacttatatgaattagag--agaattgagaga 123  Q
    ||||||||||||||||||||||||   |||| ||||||||||  ||||||||||||    
T  30410185 ttcagaagcagtttctgattctaaggtttatgtgaattagagagagaattgagaga 30410240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 249
Target Start/End: Original strand, 30410333 - 30410369
Alignment:
Q  213 gttgcttgaagcacaagcaatgtaacaaactctagat 249  Q
    ||||||||||| ||||||||||||||||| |||||||    
T  30410333 gttgcttgaagtacaagcaatgtaacaaaatctagat 30410369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 210 - 249
Target Start/End: Complemental strand, 22901312 - 22901273
Alignment:
Q  210 taagttgcttgaagcacaagcaatgtaacaaactctagat 249  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  22901312 taagttgcttgaagcacaagcaatgtaacaaactctagat 22901273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 210 - 249
Target Start/End: Complemental strand, 27757002 - 27756963
Alignment:
Q  210 taagttgcttgaagcacaagcaatgtaacaaactctagat 249  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  27757002 taagttgcttgaagcacaagcaatgtaacaaactctagat 27756963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 210 - 249
Target Start/End: Complemental strand, 27761553 - 27761514
Alignment:
Q  210 taagttgcttgaagcacaagcaatgtaacaaactctagat 249  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  27761553 taagttgcttgaagcacaagcaatgtaacaaactctagat 27761514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 246
Target Start/End: Original strand, 7940065 - 7940116
Alignment:
Q  192 ttatatacaagtctaagataagttgcttgaagcacaagcaatgtaacaaactcta 246  Q
    ||||||||||||||||   | ||||||||||||||||||||||||||||||||||    
T  7940065 ttatatacaagtctaa---acgttgcttgaagcacaagcaatgtaacaaactcta 7940116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 246
Target Start/End: Original strand, 7944618 - 7944669
Alignment:
Q  192 ttatatacaagtctaagataagttgcttgaagcacaagcaatgtaacaaactcta 246  Q
    ||||||||||||||||   | ||||||||||||||||||||||||||||||||||    
T  7944618 ttatatacaagtctaa---acgttgcttgaagcacaagcaatgtaacaaactcta 7944669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 213 - 249
Target Start/End: Complemental strand, 35705788 - 35705752
Alignment:
Q  213 gttgcttgaagcacaagcaatgtaacaaactctagat 249  Q
    |||||||||||||||||||||||||||||||||||||    
T  35705788 gttgcttgaagcacaagcaatgtaacaaactctagat 35705752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 210 - 249
Target Start/End: Original strand, 733667 - 733706
Alignment:
Q  210 taagttgcttgaagcacaagcaatgtaacaaactctagat 249  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  733667 taagttgctcgaagcacaagcaatgtaacaaactctagat 733706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 210 - 249
Target Start/End: Original strand, 7466524 - 7466563
Alignment:
Q  210 taagttgcttgaagcacaagcaatgtaacaaactctagat 249  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  7466524 taagttgcttgaagcacaaacaatgtaacaaactctagat 7466563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 210 - 249
Target Start/End: Original strand, 47419579 - 47419618
Alignment:
Q  210 taagttgcttgaagcacaagcaatgtaacaaactctagat 249  Q
    ||||||||||||| ||||| ||||||||||||||||||||    
T  47419579 taagttgcttgaaacacaaacaatgtaacaaactctagat 47419618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 45 - 93
Target Start/End: Original strand, 7939915 - 7939961
Alignment:
Q  45 tcagaagcagtgttcagaagcacatttcagaagcagtttctgattctaa 93  Q
    ||||||||| ||||||||||||   ||||||||||||||||||||||||    
T  7939915 tcagaagcactgttcagaagcag--ttcagaagcagtttctgattctaa 7939961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 45 - 93
Target Start/End: Original strand, 7944468 - 7944514
Alignment:
Q  45 tcagaagcagtgttcagaagcacatttcagaagcagtttctgattctaa 93  Q
    ||||||||| ||||||||||||   ||||||||||||||||||||||||    
T  7944468 tcagaagcactgttcagaagcag--ttcagaagcagtttctgattctaa 7944514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 45 - 93
Target Start/End: Complemental strand, 22901481 - 22901435
Alignment:
Q  45 tcagaagcagtgttcagaagcacatttcagaagcagtttctgattctaa 93  Q
    ||||||||| ||||||||||||   ||||||||||||||||||||||||    
T  22901481 tcagaagcactgttcagaagcag--ttcagaagcagtttctgattctaa 22901435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 45 - 93
Target Start/End: Complemental strand, 27757172 - 27757126
Alignment:
Q  45 tcagaagcagtgttcagaagcacatttcagaagcagtttctgattctaa 93  Q
    ||||||||| ||||||||||||   ||||||||||||||||||||||||    
T  27757172 tcagaagcactgttcagaagcag--ttcagaagcagtttctgattctaa 27757126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 123
Target Start/End: Original strand, 47419433 - 47419488
Alignment:
Q  70 ttcagaagcagtttctgattctaatacttatatgaattagag--agaattgagaga 123  Q
    ||||||||||||||||||||||||   |||| ||||||||||  ||||||||||||    
T  47419433 ttcagaagcagtttctgattctaaggtttatgtgaattagagagagaattgagaga 47419488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 210 - 249
Target Start/End: Original strand, 8315504 - 8315543
Alignment:
Q  210 taagttgcttgaagcacaagcaatgtaacaaactctagat 249  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  8315504 taagttgcttgaagcacaagcaatgtaacaaactctagat 8315543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 210 - 249
Target Start/End: Original strand, 27552111 - 27552150
Alignment:
Q  210 taagttgcttgaagcacaagcaatgtaacaaactctagat 249  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  27552111 taagttgcttgaagcacaagcaatgtaacaaactctagat 27552150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 210 - 246
Target Start/End: Complemental strand, 17780071 - 17780035
Alignment:
Q  210 taagttgcttgaagcacaagcaatgtaacaaactcta 246  Q
    |||||||||||||||||||||||||||||||||||||    
T  17780071 taagttgcttgaagcacaagcaatgtaacaaactcta 17780035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 210 - 249
Target Start/End: Original strand, 8320043 - 8320082
Alignment:
Q  210 taagttgcttgaagcacaagcaatgtaacaaactctagat 249  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  8320043 taagtttcttgaagcacaagcaatgtaacaaactctagat 8320082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 210 - 249
Target Start/End: Original strand, 14531788 - 14531827
Alignment:
Q  210 taagttgcttgaagcacaagcaatgtaacaaactctagat 249  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  14531788 taagttgcttcaagcacaagcaatgtaacaaactctagat 14531827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 210 - 249
Target Start/End: Original strand, 17096275 - 17096314
Alignment:
Q  210 taagttgcttgaagcacaagcaatgtaacaaactctagat 249  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  17096275 taagttgcttgaagcacaagcaatgtaacaaactatagat 17096314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 210 - 249
Target Start/End: Original strand, 17886849 - 17886888
Alignment:
Q  210 taagttgcttgaagcacaagcaatgtaacaaactctagat 249  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  17886849 taagctgcttgaagcacaagcaatgtaacaaactctagat 17886888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 210 - 249
Target Start/End: Original strand, 17895724 - 17895763
Alignment:
Q  210 taagttgcttgaagcacaagcaatgtaacaaactctagat 249  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  17895724 taagttgcttgaagcacaagcaatgtaacaaattctagat 17895763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 210 - 249
Target Start/End: Original strand, 27574739 - 27574778
Alignment:
Q  210 taagttgcttgaagcacaagcaatgtaacaaactctagat 249  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  27574739 taagttgcttgaagcacaagcaatgtaacaaactttagat 27574778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 128
Target Start/End: Original strand, 8319875 - 8319958
Alignment:
Q  45 tcagaagcagtgttcagaagcacatttcagaagcagtttctgattctaatacttatatgaatt--agagagaattgagagaagaga 128  Q
    ||||||||| | ||||||||||   |||||||||||||||| |||||||   |||| ||||||  |||||||||||||||||||||    
T  8319875 tcagaagcactcttcagaagcag--ttcagaagcagtttcttattctaaggtttatgtgaattagagagagaattgagagaagaga 8319958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 128
Target Start/End: Original strand, 8315359 - 8315419
Alignment:
Q  70 ttcagaagcagtttctgattctaatacttatatgaatt--agagagaattgagagaagaga 128  Q
    |||||||||||||||| |||||||   |||| ||||||  |||||||||||||||||||||    
T  8315359 ttcagaagcagtttcttattctaaggtttatgtgaattagagagagaattgagagaagaga 8315419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 210 - 249
Target Start/End: Complemental strand, 30695449 - 30695410
Alignment:
Q  210 taagttgcttgaagcacaagcaatgtaacaaactctagat 249  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  30695449 taagttgcttgaagcacaagcaatgtaacaaactctagat 30695410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 210 - 249
Target Start/End: Complemental strand, 36632458 - 36632419
Alignment:
Q  210 taagttgcttgaagcacaagcaatgtaacaaactctagat 249  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  36632458 taagttgcttgaagcacaagcaatgtaacaaactctagat 36632419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 192 - 242
Target Start/End: Complemental strand, 5733132 - 5733082
Alignment:
Q  192 ttatatacaagtctaagataagttgcttgaagcacaagcaatgtaacaaac 242  Q
    |||||||||||||||  |||||||||||||||||||||||| |||||||||    
T  5733132 ttatatacaagtctagtataagttgcttgaagcacaagcaaagtaacaaac 5733082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 246
Target Start/End: Original strand, 7099356 - 7099407
Alignment:
Q  192 ttatatacaagtctaagataagttgcttgaagcacaagcaatgtaacaaactcta 246  Q
    ||||||||||||||||   | ||||||||||||||||||||||||||||||||||    
T  7099356 ttatatacaagtctaa---acgttgcttgaagcacaagcaatgtaacaaactcta 7099407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 246
Target Start/End: Original strand, 7103925 - 7103976
Alignment:
Q  192 ttatatacaagtctaagataagttgcttgaagcacaagcaatgtaacaaactcta 246  Q
    ||||||||||||||||   | ||||||||||||||||||||||||||||||||||    
T  7103925 ttatatacaagtctaa---acgttgcttgaagcacaagcaatgtaacaaactcta 7103976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 246
Target Start/End: Complemental strand, 12018906 - 12018855
Alignment:
Q  192 ttatatacaagtctaagataagttgcttgaagcacaagcaatgtaacaaactcta 246  Q
    ||||||||||||||||   | ||||||||||||||||||||||||||||||||||    
T  12018906 ttatatacaagtctaa---acgttgcttgaagcacaagcaatgtaacaaactcta 12018855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 246
Target Start/End: Complemental strand, 12023464 - 12023413
Alignment:
Q  192 ttatatacaagtctaagataagttgcttgaagcacaagcaatgtaacaaactcta 246  Q
    ||||||||||||||||   | ||||||||||||||||||||||||||||||||||    
T  12023464 ttatatacaagtctaa---acgttgcttgaagcacaagcaatgtaacaaactcta 12023413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 246
Target Start/End: Complemental strand, 16794283 - 16794232
Alignment:
Q  192 ttatatacaagtctaagataagttgcttgaagcacaagcaatgtaacaaactcta 246  Q
    ||||||||||||||||   | ||||||||||||||||||||||||||||||||||    
T  16794283 ttatatacaagtctaa---acgttgcttgaagcacaagcaatgtaacaaactcta 16794232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 246
Target Start/End: Complemental strand, 16798844 - 16798793
Alignment:
Q  192 ttatatacaagtctaagataagttgcttgaagcacaagcaatgtaacaaactcta 246  Q
    ||||||||||||||||   | ||||||||||||||||||||||||||||||||||    
T  16798844 ttatatacaagtctaa---acgttgcttgaagcacaagcaatgtaacaaactcta 16798793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 246
Target Start/End: Complemental strand, 37658896 - 37658845
Alignment:
Q  192 ttatatacaagtctaagataagttgcttgaagcacaagcaatgtaacaaactcta 246  Q
    ||||||||||||||||   | ||||||||||||||||||||||||||||||||||    
T  37658896 ttatatacaagtctaa---acgttgcttgaagcacaagcaatgtaacaaactcta 37658845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 45 - 123
Target Start/End: Complemental strand, 37659048 - 37658968
Alignment:
Q  45 tcagaagcagt-gttcagaagcacatttcagaagcagtttctgattctaa-tacttatatgaattagagagaattgagaga 123  Q
    ||||||||||| ||||||||||||  ||||||||||||||||||||||||    |||| ||||| ||||||||||||||||    
T  37659048 tcagaagcagttgttcagaagcactgttcagaagcagtttctgattctaaggttttatgtgaataagagagaattgagaga 37658968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 246
Target Start/End: Complemental strand, 37682200 - 37682149
Alignment:
Q  192 ttatatacaagtctaagataagttgcttgaagcacaagcaatgtaacaaactcta 246  Q
    ||||||||||||||||   | ||||||||||||||||||||||||||||||||||    
T  37682200 ttatatacaagtctaa---acgttgcttgaagcacaagcaatgtaacaaactcta 37682149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 210 - 249
Target Start/End: Original strand, 26336806 - 26336845
Alignment:
Q  210 taagttgcttgaagcacaagcaatgtaacaaactctagat 249  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  26336806 taagttgcttgaagcacaaacaatgtaacaaactctagat 26336845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 214 - 249
Target Start/End: Original strand, 40367617 - 40367652
Alignment:
Q  214 ttgcttgaagcacaagcaatgtaacaaactctagat 249  Q
    ||||||||||||||||||||||||||||||||||||    
T  40367617 ttgcttgaagcacaagcaatgtaacaaactctagat 40367652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 55 - 123
Target Start/End: Complemental strand, 37682341 - 37682272
Alignment:
Q  55 tgttcagaagcacatttcagaagcagtttctgattctaa-tacttatatgaattagagagaattgagaga 123  Q
    |||||||||||||  ||||||||||||||||||||||||    |||| ||||| ||||||||||||||||    
T  37682341 tgttcagaagcactgttcagaagcagtttctgattctaaggttttatgtgaataagagagaattgagaga 37682272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 210 - 246
Target Start/End: Complemental strand, 19502465 - 19502429
Alignment:
Q  210 taagttgcttgaagcacaagcaatgtaacaaactcta 246  Q
    ||||||||||||||||||| |||||||||||||||||    
T  19502465 taagttgcttgaagcacaaacaatgtaacaaactcta 19502429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 210 - 242
Target Start/End: Original strand, 20830329 - 20830361
Alignment:
Q  210 taagttgcttgaagcacaagcaatgtaacaaac 242  Q
    |||||||||||||||||||||||||||||||||    
T  20830329 taagttgcttgaagcacaagcaatgtaacaaac 20830361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 210 - 250
Target Start/End: Complemental strand, 43385108 - 43385068
Alignment:
Q  210 taagttgcttgaagcacaagcaatgtaacaaactctagatt 250  Q
    ||||||||||||||||||| ||||||||||||| |||||||    
T  43385108 taagttgcttgaagcacaaacaatgtaacaaaccctagatt 43385068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 218 - 249
Target Start/End: Original strand, 32485994 - 32486025
Alignment:
Q  218 ttgaagcacaagcaatgtaacaaactctagat 249  Q
    ||||||||||||||||||||||||||||||||    
T  32485994 ttgaagcacaagcaatgtaacaaactctagat 32486025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 45 - 93
Target Start/End: Original strand, 7099206 - 7099252
Alignment:
Q  45 tcagaagcagtgttcagaagcacatttcagaagcagtttctgattctaa 93  Q
    ||||||||| ||||||||||||   ||||||||||||||||||||||||    
T  7099206 tcagaagcactgttcagaagcag--ttcagaagcagtttctgattctaa 7099252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 45 - 93
Target Start/End: Original strand, 7103775 - 7103821
Alignment:
Q  45 tcagaagcagtgttcagaagcacatttcagaagcagtttctgattctaa 93  Q
    ||||||||| ||||||||||||   ||||||||||||||||||||||||    
T  7103775 tcagaagcactgttcagaagcag--ttcagaagcagtttctgattctaa 7103821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 45 - 93
Target Start/End: Complemental strand, 12019058 - 12019012
Alignment:
Q  45 tcagaagcagtgttcagaagcacatttcagaagcagtttctgattctaa 93  Q
    ||||||||| ||||||||||||   ||||||||||||||||||||||||    
T  12019058 tcagaagcactgttcagaagcag--ttcagaagcagtttctgattctaa 12019012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 45 - 93
Target Start/End: Complemental strand, 16798995 - 16798949
Alignment:
Q  45 tcagaagcagtgttcagaagcacatttcagaagcagtttctgattctaa 93  Q
    ||||||||| ||||||||||||   ||||||||||||||||||||||||    
T  16798995 tcagaagcactgttcagaagcag--ttcagaagcagtttctgattctaa 16798949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 210 - 249
Target Start/End: Original strand, 10317064 - 10317103
Alignment:
Q  210 taagttgcttgaagcacaagcaatgtaacaaactctagat 249  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  10317064 taagttgcttgaagcacaagcaatgtaacaaactctagat 10317103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 210 - 249
Target Start/End: Complemental strand, 53722163 - 53722124
Alignment:
Q  210 taagttgcttgaagcacaagcaatgtaacaaactctagat 249  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  53722163 taagttgcttgaagcacaagcaatgtaacaaactctagat 53722124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 246
Target Start/End: Complemental strand, 3771017 - 3770966
Alignment:
Q  192 ttatatacaagtctaagataagttgcttgaagcacaagcaatgtaacaaactcta 246  Q
    ||||||||||||||||   | ||||||||||||||||||||||||||||||||||    
T  3771017 ttatatacaagtctaa---acgttgcttgaagcacaagcaatgtaacaaactcta 3770966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 190 - 249
Target Start/End: Complemental strand, 35842923 - 35842864
Alignment:
Q  190 gtttatatacaa-gtctaagataagttgcttgaagcacaagcaatgtaacaaactctagat 249  Q
    |||||||||||| ||||||  |||||||||||||||||||||| |||||||||||||||||    
T  35842923 gtttatatacaatgtctaac-taagttgcttgaagcacaagcattgtaacaaactctagat 35842864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 246
Target Start/End: Complemental strand, 44147198 - 44147147
Alignment:
Q  192 ttatatacaagtctaagataagttgcttgaagcacaagcaatgtaacaaactcta 246  Q
    ||||||||||||||||   | ||||||||||||||||||||||||||||||||||    
T  44147198 ttatatacaagtctaa---acgttgcttgaagcacaagcaatgtaacaaactcta 44147147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 45 - 123
Target Start/End: Complemental strand, 44147345 - 44147268
Alignment:
Q  45 tcagaagcagtgttcagaagcacatttcagaagcagtttctgattctaa-tacttatatgaattagagagaattgagaga 123  Q
    ||||||||| ||||||||||||   ||||||||||||||||||||||||    |||| ||||||||||||||||||||||    
T  44147345 tcagaagcactgttcagaagcag--ttcagaagcagtttctgattctaaggttttatgtgaattagagagaattgagaga 44147268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 246
Target Start/End: Complemental strand, 44151733 - 44151682
Alignment:
Q  192 ttatatacaagtctaagataagttgcttgaagcacaagcaatgtaacaaactcta 246  Q
    ||||||||||||||||   | ||||||||||||||||||||||||||||||||||    
T  44151733 ttatatacaagtctaa---acgttgcttgaagcacaagcaatgtaacaaactcta 44151682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 45 - 123
Target Start/End: Complemental strand, 44151880 - 44151803
Alignment:
Q  45 tcagaagcagtgttcagaagcacatttcagaagcagtttctgattctaa-tacttatatgaattagagagaattgagaga 123  Q
    ||||||||| ||||||||||||   ||||||||||||||||||||||||    |||| ||||||||||||||||||||||    
T  44151880 tcagaagcactgttcagaagcag--ttcagaagcagtttctgattctaaggttttatgtgaattagagagaattgagaga 44151803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 210 - 249
Target Start/End: Complemental strand, 31670247 - 31670208
Alignment:
Q  210 taagttgcttgaagcacaagcaatgtaacaaactctagat 249  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  31670247 taagttgcttgaagcagaagcaatgtaacaaactctagat 31670208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 210 - 249
Target Start/End: Original strand, 50627943 - 50627982
Alignment:
Q  210 taagttgcttgaagcacaagcaatgtaacaaactctagat 249  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  50627943 taagttgcttgaagtacaagcaatgtaacaaactctagat 50627982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 210 - 246
Target Start/End: Original strand, 8892621 - 8892657
Alignment:
Q  210 taagttgcttgaagcacaagcaatgtaacaaactcta 246  Q
    ||||||||||||||||||||| |||||||||||||||    
T  8892621 taagttgcttgaagcacaagcgatgtaacaaactcta 8892657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 210 - 246
Target Start/End: Original strand, 43683675 - 43683711
Alignment:
Q  210 taagttgcttgaagcacaagcaatgtaacaaactcta 246  Q
    ||||||||||||||||||| |||||||||||||||||    
T  43683675 taagttgcttgaagcacaaacaatgtaacaaactcta 43683711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 210 - 249
Target Start/End: Complemental strand, 27186302 - 27186263
Alignment:
Q  210 taagttgcttgaagcacaagcaatgtaacaaactctagat 249  Q
    |||||| ||||||||||||||||||| |||||||||||||    
T  27186302 taagtttcttgaagcacaagcaatgttacaaactctagat 27186263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 45 - 93
Target Start/End: Complemental strand, 3771167 - 3771121
Alignment:
Q  45 tcagaagcagtgttcagaagcacatttcagaagcagtttctgattctaa 93  Q
    ||||||||| ||||||||||||   ||||||||||||||||||||||||    
T  3771167 tcagaagcactgttcagaagcag--ttcagaagcagtttctgattctaa 3771121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 114
Target Start/End: Complemental strand, 31670391 - 31670347
Alignment:
Q  70 ttcagaagcagtttctgattctaatacttatatgaattagagaga 114  Q
    ||||||||||||||||||||||||   |||| |||||||||||||    
T  31670391 ttcagaagcagtttctgattctaaggtttatgtgaattagagaga 31670347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 210 - 249
Target Start/End: Complemental strand, 21847267 - 21847228
Alignment:
Q  210 taagttgcttgaagcacaagcaatgtaacaaactctagat 249  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  21847267 taagttgcttgaagcacaagcaatgtaacaaactctagat 21847228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 210 - 249
Target Start/End: Complemental strand, 21850357 - 21850318
Alignment:
Q  210 taagttgcttgaagcacaagcaatgtaacaaactctagat 249  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  21850357 taagttgcttgaagcacaagcaatgtaacaaactctagat 21850318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 210 - 249
Target Start/End: Complemental strand, 43547881 - 43547842
Alignment:
Q  210 taagttgcttgaagcacaagcaatgtaacaaactctagat 249  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  43547881 taagttgcttgaagcacaagcaatgtaacaaactctagat 43547842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 213 - 249
Target Start/End: Complemental strand, 9105428 - 9105392
Alignment:
Q  213 gttgcttgaagcacaagcaatgtaacaaactctagat 249  Q
    |||||||||||||||||||||||||||||||||||||    
T  9105428 gttgcttgaagcacaagcaatgtaacaaactctagat 9105392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 246
Target Start/End: Original strand, 54167326 - 54167377
Alignment:
Q  192 ttatatacaagtctaagataagttgcttgaagcacaagcaatgtaacaaactcta 246  Q
    ||||||||||||||||   | ||||||||||||||||||||||||||||||||||    
T  54167326 ttatatacaagtctaa---acgttgcttgaagcacaagcaatgtaacaaactcta 54167377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 246
Target Start/End: Original strand, 54171906 - 54171957
Alignment:
Q  192 ttatatacaagtctaagataagttgcttgaagcacaagcaatgtaacaaactcta 246  Q
    ||||||||||||||||   | ||||||||||||||||||||||||||||||||||    
T  54171906 ttatatacaagtctaa---acgttgcttgaagcacaagcaatgtaacaaactcta 54171957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 213 - 249
Target Start/End: Original strand, 11004407 - 11004443
Alignment:
Q  213 gttgcttgaagcacaagcaatgtaacaaactctagat 249  Q
    |||||||||||||||| ||||||||||||||||||||    
T  11004407 gttgcttgaagcacaaacaatgtaacaaactctagat 11004443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 210 - 249
Target Start/End: Complemental strand, 9697744 - 9697705
Alignment:
Q  210 taagttgcttgaagcacaagcaatgtaacaaactctagat 249  Q
    |||||| ||||||||||||||||||| |||||||||||||    
T  9697744 taagtttcttgaagcacaagcaatgttacaaactctagat 9697705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 45 - 93
Target Start/End: Complemental strand, 21847436 - 21847390
Alignment:
Q  45 tcagaagcagtgttcagaagcacatttcagaagcagtttctgattctaa 93  Q
    ||||||||| ||||||||||||   ||||||||||||||||||||||||    
T  21847436 tcagaagcactgttcagaagcag--ttcagaagcagtttctgattctaa 21847390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 45 - 93
Target Start/End: Complemental strand, 21850526 - 21850480
Alignment:
Q  45 tcagaagcagtgttcagaagcacatttcagaagcagtttctgattctaa 93  Q
    ||||||||| ||||||||||||   ||||||||||||||||||||||||    
T  21850526 tcagaagcactgttcagaagcag--ttcagaagcagtttctgattctaa 21850480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 45 - 93
Target Start/End: Original strand, 54167175 - 54167221
Alignment:
Q  45 tcagaagcagtgttcagaagcacatttcagaagcagtttctgattctaa 93  Q
    ||||||||| ||||||||||||   ||||||||||||||||||||||||    
T  54167175 tcagaagcactgttcagaagcag--ttcagaagcagtttctgattctaa 54167221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 45 - 93
Target Start/End: Original strand, 54171755 - 54171801
Alignment:
Q  45 tcagaagcagtgttcagaagcacatttcagaagcagtttctgattctaa 93  Q
    ||||||||| ||||||||||||   ||||||||||||||||||||||||    
T  54171755 tcagaagcactgttcagaagcag--ttcagaagcagtttctgattctaa 54171801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 210 - 249
Target Start/End: Complemental strand, 8055548 - 8055509
Alignment:
Q  210 taagttgcttgaagcacaagcaatgtaacaaactctagat 249  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  8055548 taagttgcttgaagcacaagcaatgtaacaaactctagat 8055509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 213 - 249
Target Start/End: Complemental strand, 8050992 - 8050956
Alignment:
Q  213 gttgcttgaagcacaagcaatgtaacaaactctagat 249  Q
    |||||||||||||||||||||||||||||||||||||    
T  8050992 gttgcttgaagcacaagcaatgtaacaaactctagat 8050956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 246
Target Start/End: Complemental strand, 36670678 - 36670627
Alignment:
Q  192 ttatatacaagtctaagataagttgcttgaagcacaagcaatgtaacaaactcta 246  Q
    ||||||||||||||||   | ||||||||||||||||||||||||||||||||||    
T  36670678 ttatatacaagtctaa---acgttgcttgaagcacaagcaatgtaacaaactcta 36670627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 246
Target Start/End: Complemental strand, 36675226 - 36675175
Alignment:
Q  192 ttatatacaagtctaagataagttgcttgaagcacaagcaatgtaacaaactcta 246  Q
    ||||||||||||||||   | ||||||||||||||||||||||||||||||||||    
T  36675226 ttatatacaagtctaa---acgttgcttgaagcacaagcaatgtaacaaactcta 36675175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 210 - 249
Target Start/End: Original strand, 12999465 - 12999504
Alignment:
Q  210 taagttgcttgaagcacaagcaatgtaacaaactctagat 249  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  12999465 taagttgcttgaagcacaagtaatgtaacaaactctagat 12999504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 93
Target Start/End: Complemental strand, 36670832 - 36670783
Alignment:
Q  45 tcagaagcagt-gttcagaagcacatttcagaagcagtttctgattctaa 93  Q
    ||||||||||| ||||||||||||  ||||||||||||||||||||||||    
T  36670832 tcagaagcagttgttcagaagcactgttcagaagcagtttctgattctaa 36670783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 93
Target Start/End: Complemental strand, 36675380 - 36675331
Alignment:
Q  45 tcagaagcagt-gttcagaagcacatttcagaagcagtttctgattctaa 93  Q
    ||||||||||| ||||||||||||  ||||||||||||||||||||||||    
T  36675380 tcagaagcagttgttcagaagcactgttcagaagcagtttctgattctaa 36675331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 70 - 130
Target Start/End: Original strand, 12999329 - 12999391
Alignment:
Q  70 ttcagaagcagtttctgattctaatacttatatgaatt--agagagaattgagagaagagaaa 130  Q
    ||||||||||||||||||| ||||   |||| ||||||  |||||||||||||||||||||||    
T  12999329 ttcagaagcagtttctgatcctaaggtttatgtgaattgtagagagaattgagagaagagaaa 12999391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 45 - 93
Target Start/End: Complemental strand, 8051164 - 8051118
Alignment:
Q  45 tcagaagcagtgttcagaagcacatttcagaagcagtttctgattctaa 93  Q
    ||||||||| ||||||||||||   ||||||||||||||||||||||||    
T  8051164 tcagaagcactgttcagaagcag--ttcagaagcagtttctgattctaa 8051118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 56 - 93
Target Start/End: Complemental strand, 8055708 - 8055671
Alignment:
Q  56 gttcagaagcacatttcagaagcagtttctgattctaa 93  Q
    ||||||||||||  ||||||||||||||||||||||||    
T  8055708 gttcagaagcactgttcagaagcagtttctgattctaa 8055671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 249
Target Start/End: Original strand, 6463442 - 6463478
Alignment:
Q  213 gttgcttgaagcacaagcaatgtaacaaactctagat 249  Q
    ||||||||||||||||  |||||||||||||||||||    
T  6463442 gttgcttgaagcacaaataatgtaacaaactctagat 6463478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 210 - 249
Target Start/End: Complemental strand, 39793987 - 39793948
Alignment:
Q  210 taagttgcttgaagcacaagcaatgtaacaaactctagat 249  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  39793987 taagttgcttgaagcacaagcaatgtaacaaactctagat 39793948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 250
Target Start/End: Original strand, 43591823 - 43591862
Alignment:
Q  211 aagttgcttgaagcacaagcaatgtaacaaactctagatt 250  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  43591823 aagttgcttgaagcacaagcaatgtaacaaactctagatt 43591862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 192 - 242
Target Start/End: Complemental strand, 41879995 - 41879945
Alignment:
Q  192 ttatatacaagtctaagataagttgcttgaagcacaagcaatgtaacaaac 242  Q
    |||||||||||||||  |||||||||||||||||||||||| |||||||||    
T  41879995 ttatatacaagtctagtataagttgcttgaagcacaagcaaagtaacaaac 41879945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 213 - 249
Target Start/End: Complemental strand, 26311663 - 26311627
Alignment:
Q  213 gttgcttgaagcacaagcaatgtaacaaactctagat 249  Q
    |||||||||||||||||||||||||||||||||||||    
T  26311663 gttgcttgaagcacaagcaatgtaacaaactctagat 26311627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 213 - 249
Target Start/End: Complemental strand, 26316154 - 26316118
Alignment:
Q  213 gttgcttgaagcacaagcaatgtaacaaactctagat 249  Q
    |||||||||||||||||||||||||||||||||||||    
T  26316154 gttgcttgaagcacaagcaatgtaacaaactctagat 26316118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 242
Target Start/End: Complemental strand, 15757148 - 15757081
Alignment:
Q  176 tgtacaagtga-tgggtttatatacaagtctaagataagttgcttgaagcacaagcaatgtaacaaac 242  Q
    ||||||||||| | || ||||||||||||||| |||||||||||||||| |||||||| |||| ||||    
T  15757148 tgtacaagtgaattggcttatatacaagtctatgataagttgcttgaagtacaagcaaagtaataaac 15757081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 36164361 - 36164409
Alignment:
Q  194 atatacaagtctaagataagttgcttgaagcacaagcaatgtaacaaac 242  Q
    |||||||||||||  ||||||||||| |||||||||||| |||||||||    
T  36164361 atatacaagtctagtataagttgcttaaagcacaagcaaagtaacaaac 36164409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 210 - 249
Target Start/End: Original strand, 16588479 - 16588518
Alignment:
Q  210 taagttgcttgaagcacaagcaatgtaacaaactctagat 249  Q
    |||||||||| || ||||||||||||||||||||||||||    
T  16588479 taagttgcttaaaacacaagcaatgtaacaaactctagat 16588518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: scaffold0440
Description:

Target: scaffold0440; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 246
Target Start/End: Complemental strand, 3155 - 3104
Alignment:
Q  192 ttatatacaagtctaagataagttgcttgaagcacaagcaatgtaacaaactcta 246  Q
    ||||||||||||||||   | ||||||||||||||||||||||||||||||||||    
T  3155 ttatatacaagtctaa---acgttgcttgaagcacaagcaatgtaacaaactcta 3104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 246
Target Start/End: Complemental strand, 7680 - 7629
Alignment:
Q  192 ttatatacaagtctaagataagttgcttgaagcacaagcaatgtaacaaactcta 246  Q
    ||||||||||||||||   | |||||||||| |||||||||||||||||||||||    
T  7680 ttatatacaagtctaa---acgttgcttgaaacacaagcaatgtaacaaactcta 7629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 246
Target Start/End: Original strand, 44847 - 44898
Alignment:
Q  192 ttatatacaagtctaagataagttgcttgaagcacaagcaatgtaacaaactcta 246  Q
    ||||||||||||||||   | ||||||||||||||||||||||||||||||||||    
T  44847 ttatatacaagtctaa---acgttgcttgaagcacaagcaatgtaacaaactcta 44898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 246
Target Start/End: Original strand, 49427 - 49478
Alignment:
Q  192 ttatatacaagtctaagataagttgcttgaagcacaagcaatgtaacaaactcta 246  Q
    ||||||||||||||||   | ||||||||||||||||||||||||||||||||||    
T  49427 ttatatacaagtctaa---acgttgcttgaagcacaagcaatgtaacaaactcta 49478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 45 - 93
Target Start/End: Original strand, 44697 - 44743
Alignment:
Q  45 tcagaagcagtgttcagaagcacatttcagaagcagtttctgattctaa 93  Q
    ||||||||| ||||||||||||   ||||||||||||||||||||||||    
T  44697 tcagaagcactgttcagaagcag--ttcagaagcagtttctgattctaa 44743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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