View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13975_low_75 (Length: 264)
Name: NF13975_low_75
Description: NF13975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13975_low_75 |
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Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 254
Target Start/End: Complemental strand, 23845274 - 23845038
Alignment:
| Q |
18 |
gttcctccacagctcccttgaggaaaatccattttggtgtttgacttaagtcttccatgtactcaagatgagtcacaaggaacacctgatatttcttttg |
117 |
Q |
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| T |
23845274 |
gttccttcacagctcccttgaggaaaatccattttggtgtttgacttaagtcttccacgtactcaagatgagtcacaaggaacacctaatatttcttttg |
23845175 |
T |
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| Q |
118 |
ggttctgatgatagtgcgcccctgtcctccatccaaaataaggctagtctgagcaaagaacgatcttccaaggataattggaaaattgtacctgtcattg |
217 |
Q |
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| T |
23845174 |
ggttctgatgatagtgcgcccctgttctccatcgaaaataagactagtctgagcaaagaacgatctgccaaggataattggaaaattgtacctgtcattg |
23845075 |
T |
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| Q |
218 |
gtgtcaactattacgatgtccaaattgagcccctatg |
254 |
Q |
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| T |
23845074 |
gtgtcaactattacgatgtccaaattgagcccctatg |
23845038 |
T |
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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 203
Target Start/End: Original strand, 28858353 - 28858407
Alignment:
| Q |
149 |
tccaaaataaggctagtctgagcaaagaacgatcttccaaggataattggaaaat |
203 |
Q |
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| T |
28858353 |
tccaaaataagaccagcctgagcaaagaacgatctccctaggataattgggaaat |
28858407 |
T |
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