View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13975_low_76 (Length: 258)
Name: NF13975_low_76
Description: NF13975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13975_low_76 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 17 - 251
Target Start/End: Complemental strand, 33608111 - 33607874
Alignment:
| Q |
17 |
aataaggtgacacaattcatttgtaacaaagtgaacctgaaattccaatgtcatatccaaaaagaagaccactggaagcagcaacgatgcatgtaatgat |
116 |
Q |
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| T |
33608111 |
aataaggtgtcacaattcatttgtaacaaagtgaacctgaaattccaatgtcatatccaaaaagaagaccactggaagcagcaacgatgcatgtaatgat |
33608012 |
T |
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| Q |
117 |
gattgaaagtgttaacttgccaccaatattgatagcagcatctggtgtactatccacagcaaataccacaccagccatttttgaaataccttttttgttt |
216 |
Q |
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|||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |
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| T |
33608011 |
gattgaaagtgttaacttgccaacaatattgacagcagcatctggtgtactatccacagcaaataccccaccagccatttttgaaatacctttttttttt |
33607912 |
T |
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| Q |
217 |
tgtctatggatttcag---ttagtttaagtctgtgctg |
251 |
Q |
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| T |
33607911 |
cttctatggatttcagtaattagtttaagtctgtgctg |
33607874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 49 - 147
Target Start/End: Complemental strand, 33626373 - 33626275
Alignment:
| Q |
49 |
gaacctgaaattccaatgtcatatccaaaaagaagaccactggaagcagcaacgatgcatgtaatgatgattgaaagtgttaacttgccaccaatattg |
147 |
Q |
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| T |
33626373 |
gaacctgaaattccgatgtcatatccaaaaagaaggccactggaagcagcaactatgcaggtaatgatgattaagaatgttaatttgctaccaacattg |
33626275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 50 - 154
Target Start/End: Complemental strand, 33615877 - 33615773
Alignment:
| Q |
50 |
aacctgaaattccaatgtcatatccaaaaagaagaccactggaagcagcaacgatgcatgtaatgatgattgaaagtgttaacttgccaccaatattgat |
149 |
Q |
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| T |
33615877 |
aacctgaaactccgagatcatatccataaagaaggccaccggatgcagcaactatgcaggtaatgatgattgagagtgttaacttgccaccaatattgat |
33615778 |
T |
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| Q |
150 |
agcag |
154 |
Q |
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|||| |
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| T |
33615777 |
ggcag |
33615773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 50 - 130
Target Start/End: Complemental strand, 33594183 - 33594103
Alignment:
| Q |
50 |
aacctgaaattccaatgtcatatccaaaaagaagaccactggaagcagcaacgatgcatgtaatgatgattgaaagtgtta |
130 |
Q |
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| T |
33594183 |
aacctgaaatcccaatgtcatatccaaaaatgagtccactagatgcagcaacgatacaagtaatgataactgagagtgtta |
33594103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 50 - 130
Target Start/End: Complemental strand, 33601314 - 33601234
Alignment:
| Q |
50 |
aacctgaaattccaatgtcatatccaaaaagaagaccactggaagcagcaacgatgcatgtaatgatgattgaaagtgtta |
130 |
Q |
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| T |
33601314 |
aacctgaaatcccaatgtcatatccaaaaatgagtccactagatgcagcaacgatacaagtaatgataactgagagtgtta |
33601234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 50 - 116
Target Start/End: Complemental strand, 33587011 - 33586945
Alignment:
| Q |
50 |
aacctgaaattccaatgtcatatccaaaaagaagaccactggaagcagcaacgatgcatgtaatgat |
116 |
Q |
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|||||||||| ||||||||||||||||||| || ||||| || ||||||||||| || |||||||| |
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| T |
33587011 |
aacctgaaatcccaatgtcatatccaaaaatgagtccactagatgcagcaacgatacaagtaatgat |
33586945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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